Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0004
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 38 4e-04
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 1.3
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.2
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 2.9
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 25 2.9
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 3.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 3.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 9.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 9.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 9.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 9.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 9.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 9.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 9.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 9.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 9.0
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 24 9.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 9.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 9.0
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 38.3 bits (85), Expect = 4e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Frame = +1
Query: 16 IVNDDGIEEADVYIEDGII------------KQVGRNLIIPGGTRTIDAAGKLVMPGGID 159
I++ GI +AD+ I++G I +G N++I T I A K+V GG+D
Sbjct: 343 IIDHTGIYKADIGIKNGYIVGIGKAGNPDTMDNIGENMVIGSSTDVISAENKIVTYGGMD 402
Query: 160 PHTHF 174
H HF
Sbjct: 403 SHVHF 407
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 94 IIPGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADDFY 216
I+P + +++M G IDP +H L ADD Y
Sbjct: 398 IVPARQMFLAFGARILMKGTIDPESHKALIEKNISWADDEY 438
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 16 IVNDDGIEEADVY 54
++NDDGIE+ D+Y
Sbjct: 206 VLNDDGIEDQDIY 218
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 102 RNDEVAANLLDDAVFDVDVSLLDTIVVND 16
RND+ N DD+ FD++V+ L+ + +ND
Sbjct: 47 RNDQ-RDNDSDDSTFDINVNQLNELDLND 74
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 136 LVMPGGIDPHTHFELEMMGAKTADDFYK 219
L++ GG++ HT +L TA D YK
Sbjct: 184 LIVSGGLNIHTFEDLSAFNEDTAADGYK 211
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 165 VGVDAPGHDQFASGIDGPCASRNDEVAAN 79
VG+D G Q +S + P N+E A N
Sbjct: 48 VGIDIDGVLQVSSSFESPSVLENEESAVN 76
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 313 NSRRPLEATALFQVERSQLWLLSLRRP 233
N ++ T+ F +E S L LLS RP
Sbjct: 414 NGEEEMDTTSAFNIENSHLTLLSPIRP 440
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 268 VLPEKGQSLLEAYANWREKADNKVCCDYGL 357
+LP+ +SL Y + N C DYG+
Sbjct: 34 ILPKNAKSLHAFYYHGTRLNMNMTCADYGI 63
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +1
Query: 22 NDDGIEEADVYIEDGIIKQVGRNLIIPGG---TRTI----DAAGKLVMPG 150
N+D E ++ ++DG++ +++P TRTI GKL+ PG
Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,870
Number of Sequences: 5004
Number of extensions: 29366
Number of successful extensions: 82
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -