Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0004
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 107 3e-24
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 34 0.042
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 31 0.39
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 30 0.52
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562... 29 1.6
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 29 1.6
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 29 1.6
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 28 2.7
01_01_0488 - 3597652-3598761,3599619-3600860 28 2.7
03_01_0100 - 791425-792996 27 3.6
07_03_0305 - 16475127-16476017,16476058-16478067 27 4.8
04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139 27 4.8
04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779 27 4.8
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 27 6.3
02_05_0040 + 25341418-25341810 27 6.3
01_05_0198 + 19170217-19171701 27 6.3
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648... 26 8.4
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 26 8.4
06_03_0574 - 22429346-22429538,22430212-22430291 26 8.4
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617... 26 8.4
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 26 8.4
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 107 bits (257), Expect = 3e-24
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Frame = +1
Query: 4 RMGRIVNDDGIEEADVYIEDGIIKQVGRNLIIPGG-TRTIDAAGKLVMPGGIDPHTHFEL 180
R G +VN +EEADVY+EDG+I V N+ + + IDA GK VMPGGIDPHTH E+
Sbjct: 58 RGGTVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGKYVMPGGIDPHTHLEM 117
Query: 181 EMMGAKTADDFYKXXXXXXXXXXXXIIDFVLPEKGQSLLEAYANWREKADNKVCCDYGLH 360
E MG T DDF+ IDFV+P G +L ++++KA+ K DYG H
Sbjct: 118 EFMGTVTIDDFFSGHAAALAGGTTMHIDFVIPVNG-NLTAGLESYKQKAE-KSAMDYGFH 175
Query: 361 VGVT 372
+ +T
Sbjct: 176 MAIT 179
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 33.9 bits (74), Expect = 0.042
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 100 PGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADD 210
PG T+D AG++++PG ++ H H + + ADD
Sbjct: 55 PGAAATVDLAGRILLPGFVNTHVHTS-QQLARGIADD 90
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 30.7 bits (66), Expect = 0.39
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 75 ASWPQPHHSWRHTDHRCRWQTGHARG 152
A W + HH WR R +WQ+ H RG
Sbjct: 311 AEWSRRHHRWRGLRDRRQWQS-HTRG 335
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 7 MGRIVNDDGIEEADVYIEDGIIKQVGRNLIIPGG-TRTIDAAGKLVMPGGIDPHTHF 174
+G V D + A +Y D + + G T ++ +G +V+PG ID H HF
Sbjct: 31 LGEAVADMILANATIYTADPAMPFAEAMAELKGRHTMELNLSGNVVLPGFIDSHVHF 87
>07_03_0806 +
21654057-21655154,21655728-21655796,21656110-21656274,
21656416-21656589,21659506-21659769,21659957-21660070
Length = 627
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 222 ALVEVIGSFSAHHFQLEVSVGVD-APGHDQFASGIDGPCASRNDEVAANLLDDAV 61
+LV F+L+VS G++ + +D+ A+ + PC R E+A ++ D AV
Sbjct: 129 SLVGAAARLVTGRFRLDVSRGINISEDYDEEANLLALPCFERATEIAISIADMAV 183
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 IEDGIIKQVGRNLIIPGG-TRTIDAAGKLVMPGGIDPHTHFELEMM 189
+ G V R + P + T+ A +L+ GG+ H HF LE++
Sbjct: 393 VAGGTTVHVSRRSLSPAAASSTVHAMSELIAGGGVLCHPHFTLELV 438
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 235 PQPGCPCRSHRQF*RPSFPARSECGGRC 152
P C CR H + R A +CGGRC
Sbjct: 90 PLAPCRCRGHGRRDRARAGAAPQCGGRC 117
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 120 RCRWQTGHARGHRPPHSLRAGNDGR*NCR*LLQGH 224
R R TGH +G +PP S +G R + R L GH
Sbjct: 315 RRRRATGHPKGRQPPGSSGSGARARQHRRRLDDGH 349
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 164 WGSMPPGMTSLPAASMV--RVPPGMMR 90
WG + PG LP A +V R+ PG+ R
Sbjct: 340 WGGLRPGAPGLPPAKVVAPRLSPGLQR 366
>03_01_0100 - 791425-792996
Length = 523
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 103 GGTRTIDAAGKLVMPGGIDPHTHFEL 180
GG +DAA +V PG +D H HF L
Sbjct: 332 GGKEGVDAA--VVRPGRLDVHIHFTL 355
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 126 GIDGPCASRNDEVAANLLDDAVFDVDVSLLDTI 28
G+ GP SRN ++ LL DAV D D SL D +
Sbjct: 882 GLCGPPLSRNCSESSKLLPDAV-DEDKSLSDGV 913
>04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139
Length = 130
Score = 27.1 bits (57), Expect = 4.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 102 WRHTDHRCRWQT 137
W+++D RCRW T
Sbjct: 15 WKYSDERCRWHT 26
>04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779
Length = 130
Score = 27.1 bits (57), Expect = 4.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 102 WRHTDHRCRWQT 137
W+++D RCRW T
Sbjct: 15 WKYSDERCRWHT 26
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 55 IEDGIIKQVGRNLIIPGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADDFY 216
I+D + NL+ G ID + GG D T F+L + A + D +
Sbjct: 1083 IDDFTVHVDSENLVPLGNKSEIDGWHTIQFAGGKDSPTKFQLTLFWASNSKDAF 1136
>02_05_0040 + 25341418-25341810
Length = 130
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 61 DGIIKQVGRNLIIPGGTRTIDAAGKLVMPGG 153
DG + G ++PGG+ + G V+ GG
Sbjct: 14 DGAVTVAGGEAVLPGGSTGVPGGGVEVLSGG 44
>01_05_0198 + 19170217-19171701
Length = 494
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 352 RSRSTPYYRLFPANSRRPLEATALFQVERSQLWLLSLRRPQPGC 221
R +STP +P+ +F VE SQ L SL R +P C
Sbjct: 254 RPKSTPPPPSSGGREIKPVNLQPVFLVECSQAMLASLLRARPLC 297
>06_03_1343 -
29463880-29464054,29464460-29464611,29464734-29464889,
29465010-29465316,29465411-29465527,29465600-29465934
Length = 413
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 31 GIEEADVYIEDGIIKQVGRNLIIPGGTRTIDAAG-KLVMPGG 153
G+E +++ +DGI+K +G + + G + G L+ GG
Sbjct: 151 GVEVINIFTKDGIVKVLGTAVCVSGAVLMVFYRGPSLIGMGG 192
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +3
Query: 93 HHSWRHTDHRCRWQTGHARGHRPPHS-LRAGNDGR*NCR*LLQGHPGCGRRRDNNHN*LR 269
HHS +DHR H GH PPH+ G GR Q H R H+
Sbjct: 126 HHS---SDHR------HGHGHHPPHAGYNCGGGGRRAPSPSPQMHAASRRHHHGRHHQQV 176
Query: 270 ST*KRAVASRGLRELAGKSR 329
+ R+ ++ + G+ R
Sbjct: 177 APKARSASASPQHNIYGRQR 196
>06_03_0574 - 22429346-22429538,22430212-22430291
Length = 90
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 234 GRRRDNNHN*LRST*KRAVASRGLRELAGKSR 329
G R N RST + AVA R +RE AG +R
Sbjct: 25 GDRPTREANGGRSTPREAVAPRSVREKAGSAR 56
>02_05_0337 -
28060009-28060716,28061055-28061498,28061732-28061793,
28061896-28062007,28062144-28062263
Length = 481
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 361 RGDRSRSTPYYRLFPANSRRPLEATALFQVERSQLWLLSLRRPQPGCP 218
R R + PY R +++ AL Q+E+ LW+ SL + G P
Sbjct: 128 RPKRKPAHPYPRKVDGAAKK--HVPALRQLEKPPLWMQSLSEQEEGSP 173
>01_05_0309 -
20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 373 RSLLRGDRSRSTPYYRLFPANSRRPLE 293
R LL GD RST + L P+NS +E
Sbjct: 785 RGLLWGDNQRSTAFSLLSPSNSYPRME 811
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,037
Number of Sequences: 37544
Number of extensions: 257905
Number of successful extensions: 807
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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