Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0004
         (374 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    27   0.23 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    27   0.23 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           22   6.5  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           22   6.5  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          22   6.5  
AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease pr...    22   6.5  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    22   8.7  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    22   8.7  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 126 RWQTGHARGHRPPHSLRAGNDGR 194
           RW    A G R PH  RAG  G+
Sbjct: 117 RWTRSGATGRRQPHPYRAGRVGQ 139


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 126 RWQTGHARGHRPPHSLRAGNDGR 194
           RW    A G R PH  RAG  G+
Sbjct: 117 RWTRSGATGRRQPHPYRAGRVGQ 139


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = -3

Query: 270  NEVNYGCCPS--GDRSPGALVEVIGSFSAHHFQLEVSVGVDAPG 145
            NE  Y       G   PG L EV G  +     ++   GV  PG
Sbjct: 1107 NETEYSSSDQLMGGGKPGPLKEVNGVVTRKGAPMKFGPGVSGPG 1150


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 140 TSLPAASMVRVPPGMM 93
           +SLP +S++  PPGM+
Sbjct: 258 SSLPLSSVIGGPPGMV 273


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 203 PMTSTRAPGLRSPEGQQP 256
           PM +  A G   PEGQ+P
Sbjct: 578 PMLANHAGGGAIPEGQEP 595


>AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease
           protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 217 CRSHRQF*RPSFPARSECG 161
           C S +Q    SFP   ECG
Sbjct: 78  CASEQQTRTSSFPTSPECG 96


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 270 NEVNYGCCP 244
           NE+ Y CCP
Sbjct: 190 NEIYYNCCP 198


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 270 NEVNYGCCP 244
           NE+ Y CCP
Sbjct: 222 NEIYYNCCP 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,547
Number of Sequences: 2352
Number of extensions: 8040
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28804305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)