Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0004
(374 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 2.1
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 2.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 2.7
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 3.6
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 3.6
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 21 6.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 6.3
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 6.3
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 6.3
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 6.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 6.3
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 20 8.3
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 20 8.3
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 20 8.3
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.2 bits (45), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 225 GALVEVIGSFSAHHFQLEVSVGVDAPGHDQFAS 127
G + + IG+F E +D PGH F S
Sbjct: 176 GGITQCIGAFDVTLESGERVTFLDTPGHAAFIS 208
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 21.8 bits (44), Expect = 2.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 249 CPSGDRSPGALVEV 208
CP G ++PG L V
Sbjct: 91 CPKGTKNPGTLATV 104
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 2.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3
Query: 270 NEVNYGCCP 244
NE+ Y CCP
Sbjct: 207 NEIYYNCCP 215
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.4 bits (43), Expect = 3.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 351 VVAAHLIIGFFPPIRVGL*KRLPFFR*NEVNY 256
+ AA ++GFFP + + + R V Y
Sbjct: 167 LTAASTVLGFFPALNIVADSFIELIRRQRVGY 198
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.4 bits (43), Expect = 3.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 82 GRNLIIPGGTRTIDAAGKLVMPGGID 159
G+ + P G ID A K + PG D
Sbjct: 650 GKLKLPPDGRTEIDVAIKTLKPGSAD 675
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 133 IPPDMYRLRP 142
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 99 SWRHTDHRCRWQTG 140
SW + HRCR G
Sbjct: 175 SWPYDTHRCRINFG 188
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 381 IPPDMYRLRP 390
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 366 IPPDMYRLRP 375
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.6 bits (41), Expect = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 110 VPPGMMRLRP 81
+PP M RLRP
Sbjct: 382 IPPDMYRLRP 391
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 20.2 bits (40), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 190 PSFPARSECGGRCPRA*P 137
PS S C GRC R P
Sbjct: 38 PSNEIFSRCDGRCQRFCP 55
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 20.2 bits (40), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 190 PSFPARSECGGRCPRA*P 137
PS S C GRC R P
Sbjct: 38 PSNEIFSRCDGRCQRFCP 55
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 20.2 bits (40), Expect = 8.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 120 DGPCASRNDEVAANLLD 70
DGP S +DE N LD
Sbjct: 459 DGPTKSWSDESLNNALD 475
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,248
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9052365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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