Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    31   0.056
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    29   0.13 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   1.6  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   2.1  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   2.1  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    25   3.7  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    24   4.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    24   4.8  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    24   6.4  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    24   6.4  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    24   6.4  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    24   6.4  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    24   6.4  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   6.4  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.7 bits (66), Expect = 0.056
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 67  ETFRTGSEQWTRFSIDHRHHAAVTSSLV 150
           + F  G+ +W+ F I+H HH A   +L+
Sbjct: 160 KAFYWGTSEWSAFEIEHAHHIATKYNLI 187


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 114 SPTPCRSNIQ---FGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGY 284
           +P P + N+Q         +  SP + P  + + ++ +TPS  +RE A H  NPI   G 
Sbjct: 390 APLPVQPNVQAETVTPKISSKASPFNKPNSVHSEASRNTPSSIDRENASH-SNPIMMHG- 447

Query: 285 KSMNGQMNTM 314
               G  N M
Sbjct: 448 NDFGGNFNNM 457


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 233 TSTGCRISASVHHLGGRVRRTSAVHFRITKLD 138
           +STG ++S S+  L    +  S  H  ++K+D
Sbjct: 79  SSTGRKVSGSIQRLASNFKNPSNPHADVSKID 110


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 243 APSHLDWVSNKRFRSSSWRESA*DFRRSFQNHQTGCYC-GMVSVINGETGPLLAACPKS 70
           +P+ +D  +      S  +  A +F  +FQ  Q G    G V + NG  G L+ AC  S
Sbjct: 187 SPNEVDSANLLGIDISESKSRAKEFVSAFQEFQIGHDSQGWVVLRNGSDGCLIGACTSS 245


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSP 188
           SP+P RS +   D + N  +P H P
Sbjct: 599 SPSPWRSELFLSDPDQNVLTPRHKP 623


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 9   AWRAHA-SSATHRHVRVTLTRDFSDRQR 89
           AW A    S TH H   T+ +D S RQ+
Sbjct: 80  AWNAKMIMSNTHMHDSTTIFKDVSSRQK 107


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 3   RTAWRAHASSATHRHVRVTLTRDFSDRQRAMDPFLH 110
           R ++  H+SS++H  +   +  DFS    ++ P  H
Sbjct: 208 RQSFPPHSSSSSHNSLHEPVIYDFSSENPSIHPSNH 243


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 129 RSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 251
           +SNI+         SPT SP +  +G+ +S+ S   ++ A+
Sbjct: 469 QSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQ 509


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 PT-PCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYST 221
           PT P  SN   GDS +N G P++     +  S +S+
Sbjct: 11  PTVPSISNNSHGDSFVNEGPPSNFKNNSLTSSTHSS 46


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 193 LAGECVGLPPFISESPNWMLLRH 125
           L G  V   P+IS  PNW+L ++
Sbjct: 146 LHGTTVKRYPYISYLPNWLLAKN 168


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 264 GCLSVRLAPSHLDWVSNKRFRSSSWRESA*DF 169
           G +SV    SHLD  + KR+  S W     DF
Sbjct: 221 GNVSVIHFDSHLDTWNPKRYYPSYWHSDRADF 252


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 132 SNIQFGDSEMNGGSPTHSPAKMMNGSA 212
           + +  GD  MNG S     A +MN S+
Sbjct: 464 NGVSIGDCIMNGHSTARKLASLMNSSS 490


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = +3

Query: 129 RSNIQFGDSEMNG-----GSPTHSPAK 194
           R  I+F DS +NG     G+P  +PAK
Sbjct: 42  RGEIEFSDSAVNGTMDIEGAPKFAPAK 68


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = +3

Query: 3   RTAWRAHASSATHRHVRVTLTRDFSDRQRAMDPFLH*SPTPCRSNIQFGDSEMNGGSPTH 182
           RT    +A  +T R V    + D +D       F   SPT   +++   DS    G+P  
Sbjct: 353 RTLNSENARESTIRSVNSPFSEDHADASLTTHVFDPISPTALSNSVLNYDSNNFSGTPQI 412

Query: 183 SPAKMMNGSAYSTPS 227
           +        + S PS
Sbjct: 413 NVVPSSPSKSQSGPS 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,747
Number of Sequences: 5004
Number of extensions: 26980
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)