Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0003
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1261 + 27410921-27413401 30 0.34
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 30 0.34
04_04_0718 + 27536657-27537688 29 0.60
02_02_0376 + 9551050-9551525,9551966-9552278 29 1.0
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 1.0
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440... 28 1.4
10_02_0110 - 5371536-5372882 28 1.8
04_01_0176 + 2003707-2004130,2004689-2004861 28 1.8
08_02_1005 + 23468230-23468994 27 2.4
08_02_0175 + 13772394-13773094,13773329-13773860 27 2.4
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 27 3.2
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507... 27 4.2
05_05_0158 + 22820764-22822032 26 5.6
03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801... 26 5.6
02_05_0219 + 26870970-26873117 26 5.6
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 26 7.4
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 26 7.4
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 26 7.4
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 26 7.4
05_05_0173 + 22956927-22958615 26 7.4
03_02_0082 - 5515019-5515087,5515178-5515285,5516032-5516148,551... 26 7.4
01_06_1014 - 33810112-33811995 26 7.4
11_04_0152 + 14153539-14154060 25 9.7
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 25 9.7
07_01_0975 + 8223269-8224354 25 9.7
05_03_0431 - 13969191-13969202,13969433-13969502,13969600-139699... 25 9.7
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 25 9.7
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 25 9.7
01_07_0138 - 41383304-41384458 25 9.7
01_06_1362 - 36677281-36677574,36677661-36677959,36678435-366785... 25 9.7
>12_02_1261 + 27410921-27413401
Length = 826
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 165 GGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 266
G + HS + N + AYSTP + +++ AEH GNP
Sbjct: 633 GANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 30.3 bits (65), Expect = 0.34
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 178 VGLPPFISESPNWMLLRHGVGDQWRNGSIARCLSEKSRVSVTRTCRCVADD 26
V + PF+SESP W L+R D R + R ++ + S+ DD
Sbjct: 249 VAVLPFVSESPRWYLVRRRADDAMR---VVRAIASSNGRSIPDDVSLKLDD 296
>04_04_0718 + 27536657-27537688
Length = 343
Score = 29.5 bits (63), Expect = 0.60
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -2
Query: 298 PFIDLYPSPVIGLP*CSAGSLSPRLGVE*ALPFIILAGECVGLPPFI-----SESPNWML 134
PFI + + + A SP L ++L+ CVGL P + E +W L
Sbjct: 74 PFIQRFKGKTVVVKYGGAAMKSPELQASVIRDLVLLS--CVGLHPVLVHGGGPEINSW-L 130
Query: 133 LRHGVGDQWRNG 98
LR GV Q+RNG
Sbjct: 131 LRVGVEPQFRNG 142
>02_02_0376 + 9551050-9551525,9551966-9552278
Length = 262
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 157 SESPNWMLLRHGVGDQWRNGSIARCLSEKSRVSVT 53
S+SP+WM + H G QW + + RV++T
Sbjct: 200 SKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTIT 234
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +3
Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN 263
S PC N + N S T + + S YST + +EP G+
Sbjct: 2152 SSEPCEDNNDMSEPSQNTLSETQGSSDAADSSGYSTSVQNRKEPVSTGGD 2201
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 184 ECVGLPPFISESPNWMLLR--HGVGDQWRNGSIARCLSEKSRVSVTRTCR 41
+CV L P + W+ L H VG + GS RC + ++S + CR
Sbjct: 1052 QCV-LSPLSLPTKQWIFLSVTHSVGRAFSTGSQLRCYVDGGQIS-NQKCR 1099
>09_04_0543 -
18442571-18443111,18443232-18443426,18443507-18444045,
18444205-18444375,18444794-18445219
Length = 623
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 165 GGSPTHSPAKMMN-GSAYSTPSRGEREPAEH*GNPITGDGYKSM---NGQMNT 311
G S ++ P M+ G A PS G PA+ G+P T GY+ + G+M T
Sbjct: 539 GPSASNFPFGMVPPGMAIPMPSLGSLAPAKMAGHPSTMQGYQGLMIPEGEMKT 591
>10_02_0110 - 5371536-5372882
Length = 448
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 264 GCLSVRLAPSHLDWVSNKRFRSSSWRESA*DFR 166
G + RLAP H W+S +R R + R + D R
Sbjct: 11 GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43
>04_01_0176 + 2003707-2004130,2004689-2004861
Length = 198
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -2
Query: 229 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 137
+LG ALPFI+ G C L + E SP WM
Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135
>08_02_1005 + 23468230-23468994
Length = 254
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 254 VFGWLPLTSTGCRISASV-HHLGGRVRRTSAVH 159
+F LP+ +TGC+++A + H GGR A H
Sbjct: 45 MFKLLPMLTTGCKMAALLGRHSGGRAAPLLADH 77
>08_02_0175 + 13772394-13773094,13773329-13773860
Length = 410
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 243 APSHLDWVSNKRFRSSSWRESA*DFRRSFQNHQTGCYCGMVSVINGETG 97
AP + W N+ RSS S ++R SF G + +++ +TG
Sbjct: 318 APHDIQWGDNQPSRSSGVSPSPSEWRSSFSRWDLGKITRRMDILDMQTG 366
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 165 GGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDG 281
GGSP S GS+ STPS G P G G G
Sbjct: 132 GGSPAPSHGGGAYGSSPSTPSGGGSSPTPSHGGGAYGGG 170
>10_08_0201 +
15746790-15746889,15748726-15748863,15750715-15750792,
15751251-15752632
Length = 565
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 175 GLPPFISESPNWMLLRHGVGDQWRNGSIARCLSEKSR 65
G PP + +P W +R G+ +R G + +E+ R
Sbjct: 70 GQPPQPAPAPGWSRMRDGMVSFFRKGKVWPIYNERGR 106
>05_05_0158 + 22820764-22822032
Length = 422
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 302 LPVHRLVSVTGDWVAL 255
LP+HR +S TG W AL
Sbjct: 195 LPIHRFLSETGRWDAL 210
>03_05_0443 -
24379756-24379794,24379896-24379967,24380054-24380161,
24380264-24380373,24381500-24381605
Length = 144
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 159 MNGGSPTHSPAKMMNGSAYSTPSRG 233
MN +PT SP +GS+Y+ P G
Sbjct: 73 MNTVAPTPSPMPTSSGSSYNAPPSG 97
>02_05_0219 + 26870970-26873117
Length = 715
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDG 281
SP+P S S+ GG+ + A + SA + + P EH G G G
Sbjct: 49 SPSPRNSTSTLSSSQGGGGADSTGVAAVSESSAAAAEATKWGAPGEHGGGGGGGGG 104
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 305 HLPVHRLVSVTGDWVALVFGWLPLT 231
H +RL+ D++ ++GWL LT
Sbjct: 555 HSNFNRLIKYQRDYIRALYGWLKLT 579
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +3
Query: 114 SPTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDG 281
SP P R+ GD+ +G +P +P +++G A S S +EP++ I GDG
Sbjct: 204 SPEPERTA---GDTTRSG-APFSAPPNLVSGPAGSPASAAAKEPSQ-----IIGDG 250
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 132 CGMVSVINGETGPLLAACP 76
CG++ +GE P +AACP
Sbjct: 539 CGILLETSGEAEPAMAACP 557
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 267 LGCLSVRLAPSHLDWVSNKRFRSSSWRESA 178
LG S L S DW+ +RF ++S+R+ A
Sbjct: 473 LGTDSNPLITSSSDWMKQRRFDTTSYRQRA 502
>05_05_0173 + 22956927-22958615
Length = 562
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 4 ERHGAPTRRPRHTDTSA*HSLETFRTGSEQWTRFSIDHRHHAA 132
E HG + R D +S+ F E + IDH HHA+
Sbjct: 343 EAHGILSSWRRILDQQIMNSVSRFEGPPESTVQEMIDHAHHAS 385
>03_02_0082 -
5515019-5515087,5515178-5515285,5516032-5516148,
5516263-5516382,5518038-5518868
Length = 414
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 PTPCRSNIQ-FGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN 263
P P S + F DS+M+ P SP+ ++P+RG A G+
Sbjct: 165 PLPSSSGRRSFSDSQMSPRLPGRSPSPSRGSRGMASPARGRSGEASPNGH 214
>01_06_1014 - 33810112-33811995
Length = 627
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 172 LPPFISESPNWMLLRHGVGDQWRNGSIARCLSEKSRVS 59
+PP + S LL V ++WR I R + E S +S
Sbjct: 120 VPPLLPASSPAKLLPANVSEEWRRLEIERKILENSTMS 157
>11_04_0152 + 14153539-14154060
Length = 173
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 156 EMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPI 269
+ GG A++ GS P+R PA H G P+
Sbjct: 12 DAGGGVGAADGARVEEGSTGEIPARRMERPARHGGVPV 49
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 199 IILAGECVGLPPFISESPNWMLLRHGVGDQWRNGSIA 89
++L L P S P ++ HG+GDQ NG +A
Sbjct: 14 LLLVVASPALVPVASAVP--FIVLHGIGDQCENGGMA 48
>07_01_0975 + 8223269-8224354
Length = 361
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 117 PTPCRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 227
P+P G S SP+ SP+ +GS S+PS
Sbjct: 229 PSPSDDTGYGGSSGSPSSSPSSSPSSSPSGSPSSSPS 265
>05_03_0431 -
13969191-13969202,13969433-13969502,13969600-13969991,
13970669-13970968
Length = 257
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 240 PSHLDWVSNKRFRSSSWRESA*DFRRSFQNHQTGCYCGMVSVINGETGPL 91
P + W N+R RSS S ++R S G + ++ +TG +
Sbjct: 171 PHDIQWGDNQRLRSSGMPPSPSEWRSSSSRWDLGEITRRMDTLDVQTGEI 220
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 10 HGAPTRRPRHTDTSA*HSLE-TFRTGSEQWTRFSIDHRHHAAVTSSLV 150
H R T +A +SL T G W +F +DH H A+ S+V
Sbjct: 190 HVCSVRACYATRAAASNSLPITGSIGLGDWEQFDVDHVHRASSELSMV 237
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 139 MLLRHGVGDQWR-NGSIARCLSEKSRVSVT-RTCRCVADDAWARHA 8
+L + G DQ +G L EK + +++ R C V DD W R A
Sbjct: 246 VLRKIGYADQAHLDGMDVHDLKEKFKENISDRRCLIVLDDVWDREA 291
>01_07_0138 - 41383304-41384458
Length = 384
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 115 DQWRNGSIARCLS 77
D+WRNG+I+ CL+
Sbjct: 60 DKWRNGTISLCLA 72
>01_06_1362 -
36677281-36677574,36677661-36677959,36678435-36678524,
36678973-36679141,36679247-36679369,36680020-36680046
Length = 333
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 221 CRISASVHHLGGRVRRTSAVHFRITKLDVTAAWC 120
CR +V + R+RRTSAV + K+ AA C
Sbjct: 241 CRDGDAVVAMDARMRRTSAVVAAMEKVMALAAEC 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,713
Number of Sequences: 37544
Number of extensions: 221835
Number of successful extensions: 672
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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