Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   2.5  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 27   2.5  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                27   2.5  
SB_11102| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 26   5.8  
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     26   7.6  

>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 260 ALVFGWLPLTSTGCRISASVHHLGGR 183
           A +F  LP+ ++ C    ++HH+GGR
Sbjct: 621 ATMFFTLPIVTSNCDGLKAIHHIGGR 646


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 216 STPSRGEREPAEH*GNPITGDGYKSMNGQMN 308
           S PS  +R PA+H  N ++ D  K+MN  +N
Sbjct: 831 SLPSLSKRRPAQHGTNSVSNDS-KNMNKPIN 860


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 89 SLPVRKVSSECHADVSVCRGR 27
          SLPV  V   CH +++V +GR
Sbjct: 17 SLPVHFVDGSCHTNINVVKGR 37


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 1   EERHGAPTRRPRHTDTSA*HSLETFRTGS----EQWTRFSIDHRHH 126
           + R G+     +HTDT A H+    R GS    E+ T    DH +H
Sbjct: 206 KHREGSDITHEKHTDTIADHTNHKHREGSDITHEKHTDTIADHTNH 251


>SB_11102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 147 QTGCYCGMVSVINGETGPLLAACPK 73
           Q GC C   +++ GE GP  AA PK
Sbjct: 4   QAGCTCAFSALVGGECGP-SAANPK 27


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
 Frame = +3

Query: 207 SAYSTPSRGEREPAEH*G-------NPITGDGYKSM 293
           S Y  P+RGER  A+H G       N  TGD Y  M
Sbjct: 46  SDYDIPTRGERHHAQHNGALPSHPYNNNTGDHYMQM 81


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 92  CSLPVRKVSSECHADVSVCRGRRV 21
           C   +R  +S CH  ++ C+G +V
Sbjct: 218 CGTDMRTYASRCHLQLAKCKGHKV 241


>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR*SMEKRVHCSLPVRK 72
           +G +P +ST   +   +HH         A   R   LD   A+        + CS+ VRK
Sbjct: 227 YGAIPQSSTTMALVNMLHHWSTSTDGNGAA-VRTLLLDYRKAF------DLIDCSILVRK 279

Query: 71  VSSECHADVSV 39
           + S+C+   S+
Sbjct: 280 LRSQCNLPASI 290


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 211  ALPFIILAGECVGLPPFISESPNWMLLR 128
            ++P II  G    L P +  +PNW+L R
Sbjct: 1102 SVPVIISLGLFACLTPVLGVAPNWVLAR 1129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,820
Number of Sequences: 59808
Number of extensions: 236142
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)