Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   0.52 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   0.52 
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    22   4.8  

>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 210 AYSTPSRGEREPAEH*GNPITGDGYKSMNG 299
           A S   R + +PAEH G   TGD +    G
Sbjct: 496 AQSAKQRTKSKPAEHAGGSTTGDKHNLFAG 525


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 210 AYSTPSRGEREPAEH*GNPITGDGYKSMNG 299
           A S   R + +PAEH G   TGD +    G
Sbjct: 496 AQSAKQRTKSKPAEHAGGSTTGDKHNLFAG 525


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
 Frame = -2

Query: 199 IILAGECVGLPPFISESPNWMLLRHGV----GDQWRNGSIARCLSEKSRVSVTR-TCRCV 35
           II  G   G  PFI E P+ +L +       G  + +  I     +      TR T   V
Sbjct: 227 IIAPGSSEGSIPFIDEDPSQILRQLNANPQRGQNFHDARIITLTPKNVGSEATRATAAAV 286

Query: 34  ADDAWARHAVL 2
           A D   R A L
Sbjct: 287 ASDQAHREAQL 297


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,406
Number of Sequences: 2352
Number of extensions: 8170
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21181083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)