Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0003
(317 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 29 0.73
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 29 0.73
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 28 1.3
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 28 1.3
Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical p... 27 2.2
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical pr... 27 2.9
AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical ... 27 2.9
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ... 27 2.9
AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical ... 27 2.9
AC006808-2|AAY86282.1| 80|Caenorhabditis elegans Hypothetical ... 27 2.9
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 3.9
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 26 6.8
AL034488-14|CAE11311.1| 341|Caenorhabditis elegans Hypothetical... 26 6.8
AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical ... 26 6.8
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 25 8.9
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 25 8.9
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 178 VGLPPFISESPNWMLLRHGVGDQWRNGSIARC--LSEKSRV 62
+G ++ E +M + + D WR GS+ R +++K+RV
Sbjct: 394 IGRMTYVEEPKRYMNINTRISDMWRKGSLVRSGYVTDKTRV 434
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 178 VGLPPFISESPNWMLLRHGVGDQWRNGSIARC--LSEKSRV 62
+G ++ E +M + + D WR GS+ R +++K+RV
Sbjct: 394 IGRMTYVEEPKRYMNINTRISDMWRKGSLVRSGYVTDKTRV 434
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 61 SLETFRTGSEQWTRFSIDHRHHAAVTSSLVILK*TAEVLRTLPPR**TEALIRHPVEVRG 240
S+ETF T S+ + HR SLV+L A L + P ++A+I +PV + G
Sbjct: 118 SMETFSTSSQDFLMLFNLHRLFIIKKKSLVLLYSIAIPLMLIGPI--SDAVIAYPVILSG 175
Query: 241 SQPN 252
N
Sbjct: 176 QDMN 179
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 61 SLETFRTGSEQWTRFSIDHRHHAAVTSSLVILK*TAEVLRTLPPR**TEALIRHPVEVRG 240
S+ETF T S+ + HR SLV+L A L + P ++A+I +PV + G
Sbjct: 118 SMETFSTSSQDFLMLFNLHRLFIIKKKSLVLLYSIAIPLMLIGPI--SDAVIAYPVILSG 175
Query: 241 SQPN 252
N
Sbjct: 176 QDMN 179
>Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical
protein F36G9.16 protein.
Length = 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 141 GCYCGMVSVINGETGPLLAACPKSL 67
G +C VS+ING +L AC SL
Sbjct: 310 GIFCEFVSIINGTLHFVLCACVSSL 334
>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 127 HGVGDQWRNGSIARCLSEKSRVSVTRTCRCVAD-DAWARHAVL 2
H D W N + L+E VT+ RC A A RH+ L
Sbjct: 895 HNFFDMWANSTTPERLTENRHEMVTKLKRCAATFVALTRHSTL 937
>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 127 HGVGDQWRNGSIARCLSEKSRVSVTRTCRCVAD-DAWARHAVL 2
H D W N + L+E VT+ RC A A RH+ L
Sbjct: 895 HNFFDMWANSTTPERLTENRHEMVTKLKRCAATFVALTRHSTL 937
>Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 749 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 791
>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 723 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 765
>Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 725 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 767
>Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical
protein T05G5.1 protein.
Length = 411
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 188 RQDDERKRLFDTQSR*EGASRTLRQPNHR*RIQVDERANEHND 316
R+DDERKR ++ Q A RT ++ R R +ER + ++
Sbjct: 104 RRDDERKREYERQV----AERTRKEKEDRERASDEERRRQQHE 142
>AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 749 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 791
>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 723 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 765
>AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 251 FGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTAAWCR 117
F W+ TSTGC I +++ GG +R+ ++ + K + +W R
Sbjct: 725 FDWIGATSTGCYIMSTM-MTGGSLRKAQR-YYLMFKDQLFDSWTR 767
>AC006808-2|AAY86282.1| 80|Caenorhabditis elegans Hypothetical
protein Y58G8A.5 protein.
Length = 80
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 263 VALVFGWLPLTSTGCRISASVHHLGGRVRR 174
++++ G L L++ C S S HHLG R+++
Sbjct: 12 LSILVGLLYLSACTCAPSVSAHHLGLRLKK 41
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 72 FSDRQRAMDPFLH*SPTPCRSNIQFGDS 155
F + + +DP + SP+PC ++ F D+
Sbjct: 4422 FDVKTKLIDPVYYTSPSPCNTDSDFSDN 4449
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 15 RAHASSATHRHVRVTLTRDFSDRQRAMDPF 104
R+ AS RH+ V R S +QR+++PF
Sbjct: 583 RSVASEPPRRHLAVDDIRKLSYQQRSLEPF 612
>AL034488-14|CAE11311.1| 341|Caenorhabditis elegans Hypothetical
protein Y54G11A.15 protein.
Length = 341
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 287 LVSVTGDWVALVFGWLPLTSTGCRISASVH 198
L+ VT D +AL+ WLP STG + A V+
Sbjct: 88 LLYVTKDPIALM--WLPFASTGGMLGAMVN 115
>AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical
protein C09D4.1a protein.
Length = 586
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 64 LETFRTGSEQWTRFSIDHRHHAAVTSSLVILK*TAEVLRTLP 189
+E +GS WT H + V+SS + + +AE TLP
Sbjct: 26 VEPSTSGSIAWTSSESGSAHSSRVSSSPITPRKSAETEETLP 67
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 58 HSLETFRTGSEQWTRFSIDHRHHAAVTSSL 147
+ +ET R S + T S H HH A TSS+
Sbjct: 1367 NEIETNRPSSLRSTSNSHHHHHHPASTSSV 1396
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 58 HSLETFRTGSEQWTRFSIDHRHHAAVTSSL 147
+ +ET R S + T S H HH A TSS+
Sbjct: 1367 NEIETNRPSSLRSTSNSHHHHHHPASTSSV 1396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,023,465
Number of Sequences: 27780
Number of extensions: 168030
Number of successful extensions: 548
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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