Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   8.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 308 VHLPVHRLVSVTGDWVALVFGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTA 129
           +++P   LV V+  WV+    WL  ++   R+S  V  L     +TS ++  +  +  T 
Sbjct: 248 IYIPCCMLVIVS--WVSF---WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYTK 302

Query: 128 A 126
           A
Sbjct: 303 A 303


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 308 VHLPVHRLVSVTGDWVALVFGWLPLTSTGCRISASVHHLGGRVRRTSAVHFRITKLDVTA 129
           +++P   LV V+  WV+    WL  ++   R+S  V  L     +TS ++  +  +  T 
Sbjct: 248 IYIPCCMLVIVS--WVSF---WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYTK 302

Query: 128 A 126
           A
Sbjct: 303 A 303


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 13  GAPTRRPRHTDTSA*HS-LETFRTGSEQWTRFSIDHRHHAAVTSS 144
           G+PT  P+H  TS   S +E             I+ + H   +SS
Sbjct: 374 GSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSS 418


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 164 VHFRITKLDVTAAWCR 117
           VHFR  +  V A W R
Sbjct: 327 VHFRSPQTHVMAPWVR 342


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 118 GDQWRNGSIARCLS 77
           GDQ   GSIAR LS
Sbjct: 6   GDQSLLGSIARSLS 19


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 106 RNGSIARCLS 77
           R GSIARC S
Sbjct: 208 RKGSIARCWS 217


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 132 SNIQFGDSEMNGGSPTHSPAKM 197
           +NI+ G  E +G    H  AKM
Sbjct: 471 ANIEIGAGEEDGVLAIHVKAKM 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,778
Number of Sequences: 438
Number of extensions: 1975
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)