Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0002
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   273   8e-74
04_04_1339 + 32760424-32760584,32762428-32764462                       32   0.38 
01_07_0231 + 42176598-42178117,42178232-42179753                       32   0.50 
08_02_0873 + 22100124-22100810                                         29   2.7  
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    28   8.2  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    28   8.2  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  273 bits (670), Expect = 8e-74
 Identities = 123/190 (64%), Positives = 148/190 (77%)
 Frame = +2

Query: 131 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 310
           + +   T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96

Query: 311 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 490
            T A ASVIYVPPP             + L+VCITEG+PQHDMV+VK AL +Q+K+RL+G
Sbjct: 97  ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIG 156

Query: 491 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGD 670
           PNCPGII P +CKIGIMP  +HK G +G+VSRSGTLTYEA  QTT  GLGQ+ CVGIGGD
Sbjct: 157 PNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216

Query: 671 PFNGTDFIDC 700
           PFNGT+F+DC
Sbjct: 217 PFNGTNFVDC 226


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 2   RRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 133
           RR   N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 553 RRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = +2

Query: 101 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 280
           G    E     I++S TK      TGK  TF    +L      VGG     +    +G+ 
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729

Query: 281 VFGTVKEAKAGTGATASV 334
           VFGTV  A  G G   ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +2

Query: 479 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVV------SRSGTLTYEACHQTTITGLG 640
           R   P+C G + PE C+ G +P  V +R C  +       +R     Y  C +  +    
Sbjct: 77  RCPDPSCGGALDPELCR-GALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADAD 135

Query: 641 QTLCVGI 661
              C G+
Sbjct: 136 DEGCAGV 142


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 516 GAMIPGQLGPTSLDLFCLKRACFTRTISCCGTP 418
           G+  P   G TSLD+ C +   +T  +S  G P
Sbjct: 106 GSSRPAAYGSTSLDMLCDRTIDYTEQLSVMGKP 138


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 395 PLIVCITEGVPQHDMVRVKHALLR 466
           PL+ CIT  VPQ  +  ++HA+ +
Sbjct: 757 PLVACITRLVPQKGLHLIRHAIYK 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,007
Number of Sequences: 37544
Number of extensions: 416471
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)