Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0002
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...   297   5e-81
AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...   292   2e-79
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    29   2.4  
U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...    27   9.8  

>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score =  297 bits (729), Expect = 5e-81
 Identities = 137/197 (69%), Positives = 154/197 (78%)
 Frame = +2

Query: 110 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 289
           Y  T  NL +  +TKVIVQGFTGKQGTFH +Q L+Y TKVVGGV+  KAGTEHLG PVF 
Sbjct: 21  YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80

Query: 290 TVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQ 469
            V EA+  TGA ASVIYVP               +PL+VCITEG+PQHDMVRVK  LL+Q
Sbjct: 81  NVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQ 140

Query: 470 NKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTL 649
           NK+RLVGPNCPGII+ ++CKIGIMP  +HKRGCIG+VSRSGTLTYEA HQTT  G GQTL
Sbjct: 141 NKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTL 200

Query: 650 CVGIGGDPFNGTDFIDC 700
           CVGIGGDPFNGT+FIDC
Sbjct: 201 CVGIGGDPFNGTNFIDC 217


>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score =  292 bits (716), Expect = 2e-79
 Identities = 135/197 (68%), Positives = 154/197 (78%)
 Frame = +2

Query: 110 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 289
           Y +TR NL++   TKVIVQGFTG+QGTFHS+Q L+Y T +VGGVSP KAG  HLG PVFG
Sbjct: 22  YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFG 81

Query: 290 TVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQ 469
           +V EAK  TGA A+VIYVP  G            + LIV ITEG+PQ DMVRVK+ LL+Q
Sbjct: 82  SVAEAKDRTGADATVIYVPAAGAARAIHEAMDAEIGLIVAITEGIPQQDMVRVKNRLLKQ 141

Query: 470 NKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTL 649
           NKSRL+GPNCPGIIA   CKIGIMP  +HK+GCIG+VSRSGTLTYEA HQTT  GLGQT 
Sbjct: 142 NKSRLLGPNCPGIIASGDCKIGIMPGHIHKKGCIGIVSRSGTLTYEAVHQTTTVGLGQTR 201

Query: 650 CVGIGGDPFNGTDFIDC 700
           C+GIGGDPFNGT+FIDC
Sbjct: 202 CIGIGGDPFNGTNFIDC 218


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +2

Query: 47  VLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKV--IVQGFTGKQGTFHSQQALDYG 220
           V   FKD +KL N+R A    Y+E  ++L+  +  +V  + +G     G     + L   
Sbjct: 280 VFEPFKDVVKLMNLREALPRQYSEHDQSLMSKNLKQVMNMAKGLKSSGGDIKRLENLRSN 339

Query: 221 TKVVGGVSPKKAGTEHLGK 277
           TK +  V  K  G   LG+
Sbjct: 340 TKELEMVDLKNIGDPWLGR 358


>U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical
           protein F09E5.16 protein.
          Length = 100

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 358 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 269
           SSRG  +  R + S AC CL   CT H +TK
Sbjct: 70  SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 397 PHCVHYRRCATT*YGASKTCPLETKQ 474
           P C+H   C TT     K C L T Q
Sbjct: 133 PTCIHVNACTTTKCSPGKKCALHTVQ 158


>U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical
           protein T20F5.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 419 GVPQHDMVRVKHALLRQN-KSRLVGPNCPG 505
           G+ + DM+R KH LL QN +SRL  P  PG
Sbjct: 19  GMQELDMLRAKHTLLIQNLRSRL--PIIPG 46


>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -1

Query: 226 FSTIVKGLLAVEGTL--LSSETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*S-IFEL 56
           +S  V   LA+ G L  + S+ +   F + C+D    GF+ R   C S++      IF L
Sbjct: 247 YSWWVLASLAILGRLNFIDSDAMKK-FIYACQDDETGGFADRPGDCVSFLNNIQKFIFVL 305

Query: 55  RKNPDWHSHCRIIEC 11
           + N    +  ++ EC
Sbjct: 306 QSNNVLATTKQLFEC 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,822
Number of Sequences: 27780
Number of extensions: 361774
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)