Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0002
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 25 0.91
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 2.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 4.9
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 21 8.5
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 21 8.5
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 8.5
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 8.5
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 8.5
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 8.5
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 8.5
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 8.5
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 8.5
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 8.5
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 24.6 bits (51), Expect = 0.91
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 116 ETRKNLILTSETKVIVQGFTGKQGTFHSQQAL-DYGTKVVGGVSPKKAGTEHL 271
+ R L +T ++ + ++ + Q++ DY + + V KKAG++HL
Sbjct: 287 DLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAGSKHL 339
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 566 CIGVVSRSGTLTYEACHQTTITGLGQTLC 652
CIG + S ++ + TT +G+ + LC
Sbjct: 126 CIGRIQWSKLQVFDCRYVTTTSGMFEALC 154
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 2 RRFTFNNSTMAMPVRVLSKFKDGLKLG 82
R TF + P++ +S KDG LG
Sbjct: 323 RPATFTCNVRGNPIKTVSWLKDGKPLG 349
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIM 105
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 315 IPSHYIEQIPVPVYYGNFPPRPIM 338
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -2
Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
+P+ + + VP ++G+ PP ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,991
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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