Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0001
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    85   8e-18
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   5.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 85.0 bits (201), Expect = 8e-18
 Identities = 45/109 (41%), Positives = 57/109 (52%)
 Frame = +3

Query: 195 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVQNGAGTG*TVYPPLSSNIAHR 374
           N LVPL++GAPD+A+PR+NN  F              + + G G G TVYPPLSS  +H 
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHS 146

Query: 375 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 521
           G ++DLAI SL L GISS                   S  Q+PLF  A+
Sbjct: 147 GPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAI 195



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 565 AGAITILLTDRNLNTSFFDPAGGGDPI 645
           AG + +L +DRNLNTSF+ P GGGDP+
Sbjct: 210 AGGLFMLFSDRNLNTSFYAPEGGGDPV 236



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 74  ELGNPGS--LIGDDQIYNTIVTAH 139
           EL  PGS  L G+ Q+YN  ++AH
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAH 68


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 266 TPTPLPYIINFKKNCTKWCRNRMNS 340
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,324
Number of Sequences: 5004
Number of extensions: 32804
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)