Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0001
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30550.1 68414.m03737 expressed protein similar to PIMT (GI:1...    28   6.1  
At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697...    28   6.1  

>At1g30550.1 68414.m03737 expressed protein similar to PIMT
           (GI:15127914) [Mus musculus]; similar to hypothetical
           protein GB:AAF19758 GI:6634778 from [Arabidopsis
           thaliana]
          Length = 391

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 307 ILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 182
           I L +NN +  G + N I F+ G+ +  APS++G   F +PP
Sbjct: 82  IALAMNNAKVYGVA-NRIDFVTGDFMQLAPSLKGDVLFLSPP 122


>At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697:
           Domain of unknown function
          Length = 575

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 395 SKIYGSSSMCDIR*KWGVNCSSCSCTILYNSS 300
           ++IYGS S+     K GV    C CT+L+N +
Sbjct: 272 ARIYGSDSIEKKEKKSGVKHELCVCTMLWNQA 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,020
Number of Sequences: 28952
Number of extensions: 172575
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)