Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2495
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052...    29   3.2  
04_04_1482 - 33903276-33903374,33903475-33903600,33904110-339043...    28   7.4  
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064...    28   7.4  
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    27   9.7  

>02_03_0235 - 16702768-16702956,16703956-16704492,16705084-16705233,
            16705310-16705625,16707005-16707286,16707895-16707971,
            16708121-16708186,16708700-16709246,16709435-16709565,
            16709642-16709746,16709859-16710039,16710123-16710185,
            16711000-16711109,16711576-16711638,16711859-16712191
          Length = 1049

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 17   ARGMTWAIDMDD-FKGLCGEENPLIKLLHKHMSTYTVPPARTGHATPTPVMGASTFNSIR 193
            A G+ W + + + F     E+N LI      M  Y   P  T     +P +  S  NS+R
Sbjct: 869  ALGIPWILAITNKFSVSAHEQNALIT---SAMEAYQASPDMTKVVNSSPFLMPSATNSLR 925

Query: 194  PI*G*SDSYHNHH 232
            PI   S S  N +
Sbjct: 926  PISSASGSLRNEN 938


>04_04_1482 -
           33903276-33903374,33903475-33903600,33904110-33904351,
           33904388-33904626,33904798-33904961,33905738-33906520
          Length = 550

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 420 KEXSKYWRCVNGEGGPILV 476
           K  S++W CV G  GP+L+
Sbjct: 322 KGLSRFWSCVEGYKGPVLI 340


>04_04_1036 +
           30305548-30305588,30305710-30305761,30306408-30306487,
           30307035-30307110,30307169-30307252,30307356-30307501,
           30307608-30307826,30308180-30308271,30308677-30308867,
           30309100-30309706,30309811-30310004
          Length = 593

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   AEFGTRYDLGYRYGRF*GTMRRGKS 81
           A FG+ Y  G RYG F GT R G S
Sbjct: 176 ASFGSNYSSGERYGSFSGT-REGDS 199


>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 525 ANRXTVSFXLKIVTRLTRELDLPPRSHIANTCXTLSCXVRSRPQSY 388
           ANR ++   L+++ R   EL +PPR + +N+         SRP SY
Sbjct: 632 ANRPSMGKVLEMLERSVHELAMPPRPYHSNSSSP------SRPSSY 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,311,711
Number of Sequences: 37544
Number of extensions: 288839
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)