Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2495
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    35   0.043
Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    24   4.3  
Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-li...    28   6.6  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   6.6  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical...    27   8.7  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 32  WAIDMDDFKGLCGEEN----PLIKLLHKHMSTYTVPPARTGHATPTPVMGASTFNSIRP 196
           W +D DDF   C   N    PLI ++ K +    +P  + G  T  P   A+T  + RP
Sbjct: 394 WTLDFDDFNAGCSNSNGQLYPLISVIAKELGGVIIP--KKGGVTTAPTTVATTVTTGRP 450


>Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical
           protein W02B12.12b protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 101 KHMSTYTVPPARTGHATPTPVMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNH 262
           KH STY+     T H T T  M + +     P    S S+HNHH + +D  K +
Sbjct: 30  KH-STYSTSKHPTTH-TRTSYMPSKSSQHHHPA---SSSHHNHHRKRSDATKRY 78


>Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical
           protein W02B12.12a protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 101 KHMSTYTVPPARTGHATPTPVMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNH 262
           KH STY+     T H T T  M + +     P    S S+HNHH + +D  K +
Sbjct: 30  KH-STYSTSKHPTTH-TRTSYMPSKSSQHHHPA---SSSHHNHHRKRSDATKRY 78


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 209 SDSYHNHHHRETDDNKNHREANYYHNESTPWXH 307
           + S H+HH    +++K+H   ++ H+    W H
Sbjct: 91  NQSGHDHHIHNNEEHKHHNMRSHDHHTMKMWFH 123


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 23.8 bits (49), Expect(2) = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 2   LVPNSARG-MTWAIDMDDFKG 61
           +V N+  G M WAID DD +G
Sbjct: 360 IVENNIGGVMIWAIDFDDDQG 380



 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 41  DMDDFKGLCGEENPLI 88
           D ++  G+CG+ +PLI
Sbjct: 416 DNEELAGMCGKSSPLI 431


>Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical
           protein Y48E1B.7 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 134 RTGHATPTPVMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREANYYHNE 289
           RT  A   P  GA+  + I  +    + YH+HHH +  +     E  Y+  +
Sbjct: 637 RTRQAASAP--GAAAGDEIDVVGIDEEDYHHHHHMDLHEVVEEEEVGYHQED 686


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 215 SYHNHHHRETDDNKNHREANYYHNES 292
           S H+H H   D N +H+E ++ H+ S
Sbjct: 140 SPHDHSHDHHDHNHSHKEHDHSHDHS 165


>U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-like
           protein protein16 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 209 SDSYHNHHHRETDDNKNHREAN 274
           SDS+H H  R  D++  H++ N
Sbjct: 151 SDSHHGHQKRSVDEHHGHQKKN 172


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 221 HNHHHRETDDNKNHREANYYH 283
           H  HHR  DD  +HR++N+ H
Sbjct: 150 HKDHHRR-DDKHHHRDSNHRH 169



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 224 NHHHRETDDNKNHREANYYHNESTPWXH*RRL*HQRE 334
           +HHHR+  D  +HR  + +H+  +   H  +  HQ E
Sbjct: 144 SHHHRDHKD--HHRRDDKHHHRDSNHRHAHKRRHQEE 178


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 209 SDSYHNHHHRETDDNKNHREANY--YHNESTPWXH*RRL*HQRETGSRGTTHGKRS 370
           S   H+H HR + D+++HR  ++   H E       RR    R   S  +   +RS
Sbjct: 277 STEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRHRSERSERSERSERS 332


>AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical
           protein Y111B2A.24 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 95  LHKHMSTYT-VPPARTGHATPTPVMGAST 178
           +HK   + T +P A T   TPTP++  ST
Sbjct: 144 IHKRSQSVTSIPAASTSTTTPTPILRPST 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,043
Number of Sequences: 27780
Number of extensions: 227142
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)