Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2493
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    31   0.19 
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    28   1.0  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   3.1  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   4.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   5.4  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.2  
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    25   7.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.5  

>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 40  YVGNPELDKLLTENEKLKHRLAILENAIK 126
           YV   ELD +L ENEK KH + IL+   K
Sbjct: 290 YVSIDELDAILEENEKNKHLINILQKENK 318


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 334 GDYQCNSAMAIAQLLKANNVKTNPREVANNILNKTPTSPIVQRIEVAGAGFLNIHLN 504
           G Y+ + ++ +  L    N  T  R +  N+L+ TP  P++  +     G  N+HLN
Sbjct: 397 GVYKYDVSLPLPVLYDLVN-DTKKRLIEFNLLDDTPEHPVIDVVGFGHMGDGNLHLN 452


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 379 SITELWPWQNYIDNLQI*DCYLTTSVRWVDSLNL 278
           S+++ +PW++Y  +  +   + TT V  VDS NL
Sbjct: 398 SLSKTYPWEHYNPSYDLPISHGTTHVSTVDSNNL 431


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 439 PTSPIVQRIEVAGAGFLNIHLNKEFVEHVLSSILKSGIQPPAVKKEKVIVDFSSPKYLQK 618
           P S IV R      G   IH + E+  H+ S +L + I+ P     ++I   SSP ++++
Sbjct: 461 PGSFIVIRFIADNPGAWVIHCHIEW--HMESGLLATFIEAP-----EMIPSISSPDFVKE 513

Query: 619 KCM 627
           +CM
Sbjct: 514 QCM 516


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 402 SPRSS**HTKQNSNITNSAKN 464
           +PRS+  H    +NITNSAKN
Sbjct: 429 TPRSTSKHENNLNNITNSAKN 449


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 55  ELDKLLTENEKLKHRLAI-LENAIKVET 135
           EL+ + +ENEKLK+ L + +E   K ET
Sbjct: 529 ELESVKSENEKLKNELVLEIEKRKKYET 556


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +1

Query: 61  DKLLTENEKLKHRLAILENAIKVETXXXXXXXXXXXXRTLPMLVTDTKSVESNFCILEEL 240
           D L   N++LK ++   EN +  E             RTL    T     E N C L E 
Sbjct: 523 DDLTEMNQRLKEQIESYENEVNSEITS----------RTLKEFETLKTQYEKNLCNLREQ 572

Query: 241 KNLFEVAITNAYPDLEN 291
                + + + YP  +N
Sbjct: 573 LKTARMKLADKYPQGDN 589


>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 379 KANNVKTNPREVANNILNKTPT 444
           +AN  KTN +++AN ILN++ T
Sbjct: 113 RANLNKTNVKKLANQILNQSVT 134


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 561 CSKERKSYCRLFITKIFAKEMHVXPFKXYH 650
           C ++R S+ R    K+F+K +   PF   H
Sbjct: 405 CLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,492
Number of Sequences: 5004
Number of extensions: 43905
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)