Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2492
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    30   2.3  
06_03_0073 + 16229369-16230115,16230182-16230431,16230618-162307...    29   3.0  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    29   3.0  
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269...    29   3.9  
07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329...    29   5.2  
01_06_1313 - 36212524-36213669                                         29   5.2  
08_02_0174 + 13769487-13770352,13770357-13770408,13770438-137707...    28   6.9  
03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596     28   9.1  

>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
            11064598-11064816,11065301-11065429,11066502-11068031,
            11068654-11069013,11069086-11069205,11069727-11069897,
            11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 576  SISVIASA-SPNRPPTNLLTILDTEPQTGIEETL 674
            S S   SA S + PP+N+   +D  PQ GI+ETL
Sbjct: 917  STSTYNSADSSHEPPSNVNPPIDNVPQVGIQETL 950


>06_03_0073 +
           16229369-16230115,16230182-16230431,16230618-16230728,
           16230768-16231153
          Length = 497

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  NPLGLATMKTCSMSVMAPFFPFREYNCLRTLLVSF 157
           N   + T   CSM+ ++ FFP  + N LR  + SF
Sbjct: 144 NRAAINTWDKCSMAFLSKFFPMGKTNALRGRIFSF 178


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 249 GSEGGEPLPPANIPIDAVWQPVAGTR 326
           G  G EP PP   P +++W P+   R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131


>09_01_0184 +
           2693576-2693578,2694157-2694952,2695169-2695249,
           2695454-2695793,2695799-2696258,2696404-2696526,
           2696532-2697266
          Length = 845

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  NPLGLATMKTCSMSVMAPFFPFREYNCLRTLLVSF 157
           N   + T   CSM+ ++ FFP  + N LR  + SF
Sbjct: 57  NRAAINTWDKCSMAFLSKFFPMGKTNALRGRISSF 91


>07_03_1096 +
           23931862-23931931,23932406-23932549,23932888-23932986,
           23933422-23933498,23933813-23933921,23934973-23935301,
           23935838-23935930
          Length = 306

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 622 LVGGRFGEALAMTDMDPPTVSCGFTPXSFSKHRTYVALYF 503
           L+  +FG+ L   D+D    SCG    + S HRT +++Y+
Sbjct: 268 LINKKFGKQLLSIDIDLWLWSCGVQNMALSHHRT-LSIYY 306


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 580 MDPPTVSCGFTPXSFSKHRTYVALYFKFQFSLIALTRALSVSV 452
           M PPT S      SF  HR+ V  +F     L+A   AL V V
Sbjct: 233 MAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKV 275


>08_02_0174 +
           13769487-13770352,13770357-13770408,13770438-13770705,
           13770745-13771022,13771049-13771486
          Length = 633

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  NPLGLATMKTCSMSVMAPFFPFREYNCLRTLLVSF 157
           N   + T   CSM+ ++ FFP  + N LR  + SF
Sbjct: 97  NRAAVNTWDKCSMAFLSKFFPVGKTNALRGRISSF 131


>03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596
          Length = 697

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 71  TMKTCSMSVMAPFFPFREYNCLRTLLVSF 157
           T   CSM+ ++ FFP  + N LR  + SF
Sbjct: 103 TWDKCSMAFLSKFFPMGKTNALRGRISSF 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,666,983
Number of Sequences: 37544
Number of extensions: 433641
Number of successful extensions: 1325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)