Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2492
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    31   1.2  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    31   1.2  
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    28   6.2  
AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 362 SDGSRGANNRSDKNARSRPRHLPLVAPRQPHADAQGPRQGYKRKLEF 502
           SDGS G  +RS   A SR +H  +   +Q    + GP + + R   F
Sbjct: 460 SDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSF 506


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 362 SDGSRGANNRSDKNARSRPRHLPLVAPRQPHADAQGPRQGYKRKLEF 502
           SDGS G  +RS   A SR +H  +   +Q    + GP + + R   F
Sbjct: 460 SDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSF 506


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 389 RSDKNARSRPRHLPLVAPR-QPHADAQGPRQGYKRKLEFKIQCNVRSVFAERXRC---EA 556
           R  K    +P  + ++  R  PH   +  RQ  KR+++ K +  V S  +E+ +C   +A
Sbjct: 361 RRKKKLNEKPNKIKIIRARVPPHKKIRSTRQFGKRRVKRKPKVPVGSSNSEQAKCKLEKA 420

Query: 557 TRDSRRIHISHRKCFTKSTAD*P 625
             + ++  +S    F  +  + P
Sbjct: 421 NSEEKKTEVSSEDVFLDANEEFP 443


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 513 ATYVLCLLKDXGVKPQETV-----GGSISVIASASPNRPPTNLLTILDTEPQTGIEET 671
           AT+VL  + D  V     V      G I  + +   N  P NL  I+ T  +TGI ET
Sbjct: 809 ATHVLMTIGDNAVLEGSVVLGGEGDGLIGCVRNVLINDEPVNLQEIVKTSEKTGITET 866


>AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49A3A.4 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 473 RQGYKRKLEFKIQCNVRSVFA---ERXRCEATRDSRRIHISHRK 595
           R+ YKR +   +QC     F    +    E T DSR IHISH K
Sbjct: 97  RKFYKRMMS--LQCAKTCKFCVDDDEYEEEETEDSREIHISHLK 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,366,443
Number of Sequences: 27780
Number of extensions: 365115
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)