Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2490
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.52
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.2
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 2.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 2.1
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 2.8
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 26 3.7
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c... 26 3.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 4.8
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 6.4
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 0.52
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -2
Query: 358 RRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSI-DCDICESFASINLSRLLIRG 182
R ++ N R P P R+ P+F +S+LS+ D+ S + G
Sbjct: 687 RESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSG 746
Query: 181 SSTPSDTFSVF 149
PS + S++
Sbjct: 747 QQRPSSSMSLY 757
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -2
Query: 337 SFNSKRVPLPPFLARNKATAPAFSIPSSNLSID---CDICESFASINLSRL-LIRGSSTP 170
S + + P P A N T+PA P++ S D D ++ S + GSSTP
Sbjct: 224 SSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283
Query: 169 SDTFS 155
S+T S
Sbjct: 284 SNTSS 288
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 483 QVAHPARKRHTIEQSLTTCFAPIPL 409
++AHP H + QSL +CF + L
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFLVVLL 212
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 2.1
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = -2
Query: 406 RPTYTLICLSTAATLFRRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSIDCDIC 227
RP++TL LS+ A S S P PP ++ AT S+P S D +
Sbjct: 364 RPSHTLSELSSPALTSENL---SSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPSVA 420
Query: 226 ESFASINLSRLLIRGSSTPSDTFSV 152
S +S + ++++GS DT SV
Sbjct: 421 ASSSSSSQLDVVLKGSI--PDTSSV 443
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 2.8
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 6 MSVRFVRTILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNXVGKTLNV 164
+S RF+R I +LL+ V SRA +++VDV E+I W V TL++
Sbjct: 42 VSSRFMRLIELLLSKVDRSRA--EDIVDV--------EDIDNRWAEVSDTLDI 84
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 298 ARNKATAPAFSIPSSNLSIDCDICES 221
A ++AP+FS S N S D D C S
Sbjct: 21 ASTVSSAPSFSFVSGNESADLDSCAS 46
>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 351 PSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPA 256
PS +TQ+ F ++R+W T P + S F A
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSA 139
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 442 KPN---NVLRSNSS*RPTYTLICLSTA 371
KPN N + SN + P Y+ +CLST+
Sbjct: 500 KPNTYKNTILSNENNTPNYSNVCLSTS 526
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 397 YTLICLSTAATLFRRTVMSCSF 332
YT +CLS A LFR S SF
Sbjct: 538 YTAVCLSAALLLFRIAKPSGSF 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,334
Number of Sequences: 5004
Number of extensions: 37210
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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