Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2490
         (500 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058541-1|AAL13770.1|  664|Drosophila melanogaster LD24308p pro...    47   2e-05
AE014298-1093|AAF46301.1|  664|Drosophila melanogaster CG2206-PA...    47   2e-05
X53275-1|CAB37863.1|  700|Drosophila melanogaster neurogenic pro...    29   2.7  
AY051981-1|AAK93405.1|  696|Drosophila melanogaster LD45157p pro...    29   2.7  
AE014134-1748|AAF52844.1|  696|Drosophila melanogaster CG4722-PA...    29   2.7  
AE014298-1474|AAF46609.1|  624|Drosophila melanogaster CG15295-P...    29   4.7  
AE014297-2380|AAF55445.1|  210|Drosophila melanogaster CG14323-P...    28   6.2  

>AY058541-1|AAL13770.1|  664|Drosophila melanogaster LD24308p
           protein.
          Length = 664

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +3

Query: 66  ALVDEVVDVLKLGKEIGEEIIASWNXVGKTLNVSEGVXXXXXXXXXXXXXAKLSHISQSI 245
           AL+++V+D++ + KE+   ++ +W+ V ++  ++  +              +L  +S+ I
Sbjct: 26  ALIEDVLDIIHVVKEVTSGVLKAWDIV-QSSPLAANIDFPLMREKQKKVLQRLKEVSKQI 84

Query: 246 DRLELGIEKAGAVAL-FLAKNGGRGTRFELKLHDMTVLLNKVAAVDRQMRVYVGLQEELE 422
           D  E    +  A+A+  +            K++D++  +N++++  +QM+ Y   +++LE
Sbjct: 85  DNTEDQHAQYVALAIESVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLE 144

Query: 423 RSTLLGFAQ 449
            STL+ FA+
Sbjct: 145 MSTLITFAE 153


>AE014298-1093|AAF46301.1|  664|Drosophila melanogaster CG2206-PA,
           isoform A protein.
          Length = 664

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +3

Query: 66  ALVDEVVDVLKLGKEIGEEIIASWNXVGKTLNVSEGVXXXXXXXXXXXXXAKLSHISQSI 245
           AL+++V+D++ + KE+   ++ +W+ V ++  ++  +              +L  +S+ I
Sbjct: 26  ALIEDVLDIIHVVKEVTSGVLKAWDIV-QSSPLAANIDFPLMREKQKKVLQRLKEVSKQI 84

Query: 246 DRLELGIEKAGAVAL-FLAKNGGRGTRFELKLHDMTVLLNKVAAVDRQMRVYVGLQEELE 422
           D  E    +  A+A+  +            K++D++  +N++++  +QM+ Y   +++LE
Sbjct: 85  DNTEDQHAQYVALAIESVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLE 144

Query: 423 RSTLLGFAQ 449
            STL+ FA+
Sbjct: 145 MSTLITFAE 153


>X53275-1|CAB37863.1|  700|Drosophila melanogaster neurogenic
           protein big brain protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = -3

Query: 492 PARQVAHPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL 313
           P + ++ P ++    +    T   P P++G        P       GP  R  S Q+   
Sbjct: 519 PPQMMSDPQQQPQGFQPVYGTRTNPTPMDGNHKYDRRDPQQMYGVTGPRNRGQSAQSDDS 578

Query: 312 SLRSWPG---TRPPHRPSLFPAPICRSIAIYA 226
           S  S+ G   T P   PS+ P+P    + +YA
Sbjct: 579 SYGSYHGSAVTPPARHPSVEPSPPPPPMLMYA 610


>AY051981-1|AAK93405.1|  696|Drosophila melanogaster LD45157p
           protein.
          Length = 696

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = -3

Query: 492 PARQVAHPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL 313
           P + ++ P ++    +    T   P P++G        P       GP  R  S Q+   
Sbjct: 520 PPQMMSDPQQQPQGFQPVYGTRTNPTPMDGNHKYDRRDPQQMYGVTGPRNRGQSAQSDDS 579

Query: 312 SLRSWPG---TRPPHRPSLFPAPICRSIAIYA 226
           S  S+ G   T P   PS+ P+P    + +YA
Sbjct: 580 SYGSYHGSAVTPPARHPSVEPSPPPPPMLMYA 611


>AE014134-1748|AAF52844.1|  696|Drosophila melanogaster CG4722-PA
           protein.
          Length = 696

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = -3

Query: 492 PARQVAHPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL 313
           P + ++ P ++    +    T   P P++G        P       GP  R  S Q+   
Sbjct: 520 PPQMMSDPQQQPQGFQPVYGTRTNPTPMDGNHKYDRRDPQQMYGVTGPRNRGQSAQSDDS 579

Query: 312 SLRSWPG---TRPPHRPSLFPAPICRSIAIYA 226
           S  S+ G   T P   PS+ P+P    + +YA
Sbjct: 580 SYGSYHGSAVTPPARHPSVEPSPPPPPMLMYA 611


>AE014298-1474|AAF46609.1|  624|Drosophila melanogaster CG15295-PA
           protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 319 VPLPPFLARNKATAPAFSIPSSNLSI 242
           VP PPFL+R  ATA A +  ++ LSI
Sbjct: 141 VPRPPFLSRAAATAAAAAAAAAALSI 166


>AE014297-2380|AAF55445.1|  210|Drosophila melanogaster CG14323-PA
           protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = -3

Query: 411 LEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAP 253
           L G   +    P PP     P   +V T        S PG  P  RP  FP P
Sbjct: 139 LSGASPIRPAPPFPPPPPGMPPPTSVGTVQASAGGYSGPGAGPGQRPGPFPIP 191


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,675
Number of Sequences: 53049
Number of extensions: 481259
Number of successful extensions: 1677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)