Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2490
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 29 1.4
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 29 1.4
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 29 1.4
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 28 3.3
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 28 3.3
AC084153-4|AAK84598.2| 836|Caenorhabditis elegans Hypothetical ... 28 4.4
U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical pr... 27 5.8
AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical ... 27 5.8
Z92830-16|CAO82027.1| 197|Caenorhabditis elegans Hypothetical p... 27 7.6
AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical ... 27 7.6
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Frame = -3
Query: 474 HPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL----SL 307
H + H + + IP+ LS+V P PPL S PS + +L +
Sbjct: 129 HSKKDGHPVYEERCRVSLTIPISSSEDLSAVSPPPPLPSVPPSKERIKRIPSYLKPTPAP 188
Query: 306 RSWPGTRPPHRPSLFPAP 253
RS T P R P P
Sbjct: 189 RSMSATLPRARLKTPPPP 206
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 275 RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 394
+ GG+ G ++R+E+ P VE + D PS S DES
Sbjct: 1316 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1356
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 275 RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 394
+ GG+ G ++R+E+ P VE + D PS S DES
Sbjct: 1313 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1353
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = -3
Query: 393 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 226
L S+C P P C + P+ + V++ + FLS+ P P + LF C+S+A
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552
Query: 225 RVLPVLIFH 199
LP+ H
Sbjct: 553 ISLPMAFVH 561
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = -3
Query: 393 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 226
L S+C P P C + P+ + V++ + FLS+ P P + LF C+S+A
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552
Query: 225 RVLPVLIFH 199
LP+ H
Sbjct: 553 ISLPMAFVH 561
>AC084153-4|AAK84598.2| 836|Caenorhabditis elegans Hypothetical
protein Y22D7AL.9 protein.
Length = 836
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 289 KATAPAFSIPSSNLSIDCDICESF-ASINLSRLLIRGSSTP 170
K P+ SI NL+ ++CE+F +I R+L R + P
Sbjct: 218 KMDTPSISIIRENLATIAELCENFQVAIEQRRILSRNGNMP 258
>U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical
protein F53E10.6 protein.
Length = 191
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 347 DGPSEQSGGSGQTDESVRRPSRGIGAKHVVR 439
+GPS GG+G DE+V P+ K V++
Sbjct: 33 EGPSSVDGGAGDADETVAFPAIERRKKKVIK 63
>AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical
protein C07F11.2 protein.
Length = 484
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 125 YLFAYLLPEFEYVDDFID 72
Y +LPE EYV+DF+D
Sbjct: 339 YFNKVVLPEMEYVEDFVD 356
>Z92830-16|CAO82027.1| 197|Caenorhabditis elegans Hypothetical
protein F11A5.17 protein.
Length = 197
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 205 D*YWQNSRIYRNR--STDWSWE*RRPVR 282
D YW NSR++ S+ WSW+ + R
Sbjct: 67 DKYWNNSRLWNESWVSSHWSWKGKEGTR 94
>AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical
protein F49F1.6 protein.
Length = 259
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 453 TIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHR 274
T+ S TT +P + L S P PP P+C A +NGF + + PP +
Sbjct: 196 TVVPSTTT---KLPATTTKKLPSTTPKPPCKDSSPNC-AGWAKNGFCTNTFY----PPEK 247
Query: 273 PSLFPAPICR 244
+ A CR
Sbjct: 248 RKEYCAKTCR 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,360
Number of Sequences: 27780
Number of extensions: 227168
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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