Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2485
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   4.8  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   6.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 51   LMNGSYTSIMNKQDLLREVVVKYIDYFYP 137
            LM       +  +DLLR VV+KYID+  P
Sbjct: 1384 LMRLKDLEFLETKDLLRHVVLKYIDHTNP 1412


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 174  KIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 314
            ++ Q +  +KS L   V+ + E L+   A+   +I QLE++NT L A
Sbjct: 1335 ELNQEIGHLKSELE-TVKSKSEDLENERAQNQSKIEQLELKNTKLAA 1380


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 183 QAMDLVKSHLMFAVREEVEVLKERIAELMERI----TQLEV-ENTYLRAHASQDTLAQLP 347
           ++ ++ K  L   VR+E+  +KE+I  L ERI    T++ V EN   +    +DTL  L 
Sbjct: 35  ESREIEKKRLQ-KVRKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSKFRDTLQSLQ 93

Query: 348 AAQGN 362
           + + +
Sbjct: 94  SDEND 98


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 168  DNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 314
            D + EQA+   K  L+      VEV+ ER++ L  ++T  + +  +L A
Sbjct: 875  DLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIADEKYEFLYA 923


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 174 KIEQAMDLVKSHLMFAVREEVEV----LKERIAELMERITQLEVENTYLR 311
           ++++A D ++   +F    ++++    +KE++ E    I+Q EVE T LR
Sbjct: 705 QVQEAEDALERERLFREINDLQIQNAEMKEQVYEKESTISQKEVEITSLR 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,896
Number of Sequences: 5004
Number of extensions: 33940
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)