Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2485
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical pr...    73   1e-13
U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical pr...    73   1e-13
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    68   4e-12
Z29560-10|CAA82663.1|  296|Caenorhabditis elegans Hypothetical p...    35   0.051
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   5.9  
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    27   7.7  
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ...    27   7.7  

>Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical
           protein T18D3.7 protein.
          Length = 102

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 38/70 (54%), Positives = 47/70 (67%)
 Frame = +3

Query: 141 ASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHA 320
           A+  + VAIDNKI QAMDLVK+HL FAVREEVE L+  I +L  R+  L  EN  LR + 
Sbjct: 27  ATSNTVVAIDNKIVQAMDLVKTHLTFAVREEVETLRTTITDLEARLNALREENRLLRENV 86

Query: 321 SQDTLAQLPA 350
           S + LA + A
Sbjct: 87  SPEVLAFITA 96


>U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical
           protein C30G4.7 protein.
          Length = 114

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +3

Query: 165 IDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQL 344
           IDNKIEQAMDLVK+HLMFAVREEV+ L+ +I +L   + +LE EN+ L+     DTL QL
Sbjct: 51  IDNKIEQAMDLVKTHLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKRTIPNDTLKQL 110


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 34/84 (40%), Positives = 52/84 (61%)
 Frame = +3

Query: 135 PLASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 314
           P  +  +   IDNKIEQAM+LVK+HL +AVREEV+ L+  IAEL  ++ + + E TY R 
Sbjct: 470 PSTTADTHTPIDNKIEQAMELVKTHLTYAVREEVDTLRNTIAELEYQMRESQYECTYYRQ 529

Query: 315 HASQDTLAQLPAAQGNKPAAQPQP 386
           + + D + Q  +    + A+  +P
Sbjct: 530 NCAPDLIEQASSFVHQQMASHQRP 553


>Z29560-10|CAA82663.1|  296|Caenorhabditis elegans Hypothetical
           protein K03H1.11 protein.
          Length = 296

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
 Frame = +3

Query: 33  GTMQTKLMNGSYTSIMNKQDLLREVVVKYIDYFYPLASGTSAVAIDNKIEQAMDLVKSHL 212
           G   T L+N + ++I    D++R V+V  I     +  G ++  ++ K +   D  + H+
Sbjct: 17  GLKPTDLVNSALSNI----DVMR-VIVDMIPKIRAIKIGITSEKLNGKCDG--DEFELHI 69

Query: 213 MFAVREEV-EVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKPAAQ 377
               REE+ E+L   + +++  I  L++EN  +    S + LAQL     N P  Q
Sbjct: 70  PKVNREEIQELLHFLMPQIVNEIHSLQLENELVGDEISDEQLAQLLQLTKNAPLKQ 125


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 111 VKYIDYFY-PLASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAEL 266
           V Y+D  Y P      A   D K+E+A+D    H     ++E+E+   +  EL
Sbjct: 423 VSYVDKNYDPKMEAKRAETFDEKVEKAVDSAGVHAAEKRQKEIEIDPSKFLEL 475


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 413 AAEPARWPQAAPALAPFARGSP 478
           A EPA  P AAP  AP A GSP
Sbjct: 379 APEPAPAPAAAPPPAPAAGGSP 400


>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
           protein F59F5.6 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 222 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKP 368
           VRE + V  ER+A L E ++    EN+ L+A  +        A   N P
Sbjct: 181 VRERLRVAMERVATLEEELSTKGDENSSLKARIATYAAEAEEAMASNAP 229


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 208 WLLTRSIACSILLSMATALVPDASG 134
           WL+T  IA  ++ S    LVPD +G
Sbjct: 142 WLITHYIAIGLIFSSFALLVPDQNG 166


>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
           homolog SYD-2 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 222 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKP 368
           VRE + V  ER+A L E ++    EN+ L+A  +        A   N P
Sbjct: 181 VRERLRVAMERVATLEEELSTKGDENSSLKARIATYAAEAEEAMASNAP 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,497
Number of Sequences: 27780
Number of extensions: 203836
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)