Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2484
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    29   2.2  
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    29   2.9  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protei...    27   8.7  
AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine r...    27   8.7  

>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 105 CVLNHLNNRD*TIDGVALQFLALQSIYLIYFVQIFLS 215
           C  N   N D T++ VA   LAL  + +I+F  + LS
Sbjct: 198 CKANKTKNNDATMNRVAANRLALIDVIIIFFFDVLLS 234


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -2

Query: 637 EXLFKTLLQIMVMFASYQKYSXVLILNFLLIP 542
           E +F+TL+ I  + AS  +YS V+ILNFL  P
Sbjct: 181 EQVFETLISIFKLHAS--EYSRVVILNFLNSP 210


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 629 IQNIITNYGYVCKLSKIFXGSHFKFSFNTQT 537
           +  ++T++GY+C+ S      H +  FN  T
Sbjct: 362 VDELLTSFGYICRTSNTQTLKHMRMGFNALT 392


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 629 IQNIITNYGYVCKLSKIFXGSHFKFSFNTQT 537
           +  ++T++GY+C+ S      H +  FN  T
Sbjct: 362 VDELLTSFGYICRTSNTQTLKHMRMGFNALT 392


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 277 GRSRSSLLIQTHGTPASNLSFDK-KICTKYIKYILCNAKNCNATPSI 140
           G SR ++    +G P   L +D  K     +KY  C+AK    TP +
Sbjct: 174 GVSRKAIRDLFNGVPILQLIYDSDKFPNNVLKYTSCHAKQAKITPGL 220


>U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protein
           166, isoform a protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 417 YSTSQQDRKQRNCLIKINQLRDERKMS-ESSTRRK 316
           Y  + Q RKQ   LIK N + DE+++  E+S+ R+
Sbjct: 44  YKAASQGRKQVGNLIKPNTMSDEKQLEIEASSLRR 78


>AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine
           receptor, class h protein82 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 140 Y*WSSVTVFSITEYIFNIFCTDFFVKR*IGCWRTMSLN 253
           Y + S+TVFSI  YIF  +C  F     +G +R    N
Sbjct: 30  YTFHSITVFSIPFYIFGGYCILFKSTSQMGSYRLPLFN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,322
Number of Sequences: 27780
Number of extensions: 250225
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)