Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2482
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    31   0.14 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.3  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   4.1  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/57 (28%), Positives = 34/57 (59%)
 Frame = +2

Query: 146 YETEEAELREKLNKETKKFILPLEEATNKIEQNLLQWQHLLFGGQPPQVDFNGNIYK 316
           Y+ +  +L+++L  E  + IL  ++A  KIE+++ +W+H   G +  +++   N YK
Sbjct: 749 YKDDVKDLKQRL-PELDRLILQSDQAIKKIERDMQEWKHNK-GSKMAELEKEFNQYK 803


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 IVENLRRIKKVFFFILGIHVFACRHIIFLSFTESHERKDEVLLDVC 592
           +V N++ +K      L I    C+   FLSF + HE K  + L  C
Sbjct: 627 LVPNIQALKLESSVPLEIRCSNCKQPCFLSFMQCHEPKKFICLGDC 672


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 565 PFMAFSKTEKNNVATGKNV 509
           PFMAFS T+K +V+  +NV
Sbjct: 39  PFMAFSCTQKPSVSENENV 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,013
Number of Sequences: 5004
Number of extensions: 57273
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)