Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2482
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0348 - 28162681-28162849,28162946-28163154                       29   4.2  
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697...    29   4.2  
02_05_1176 + 34715527-34715614,34716726-34716742,34717613-347176...    28   5.6  
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249...    27   9.8  

>02_05_0348 - 28162681-28162849,28162946-28163154
          Length = 125

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 457 CGKFKKN*KSIFFYSGDTRFC 519
           CG+     K IF Y GDT FC
Sbjct: 56  CGRMLAGNKDIFMYRGDTPFC 76


>01_01_0887 +
           6978869-6979053,6979183-6979558,6979651-6979734,
           6979838-6979903,6980938-6981007,6981333-6981718,
           6982114-6982154,6982661-6982757
          Length = 434

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 320 IKTRVQWDQYLSQDGKSLPTGWVVPNP 400
           I+ R  WD ++   G  +P  WV P P
Sbjct: 388 IEVRRMWDSFIRAGGSRIPGHWVQPPP 414


>02_05_1176 +
           34715527-34715614,34716726-34716742,34717613-34717696,
           34718001-34718207
          Length = 131

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 505 DTRFCLSPHYFSQFY 549
           DT  CL PHY S+FY
Sbjct: 5   DTSLCLMPHYTSRFY 19


>02_05_0770 -
           31623415-31623960,31624467-31624709,31624808-31624906,
           31625058-31625234,31625441-31625512
          Length = 378

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 KFILPLEEATNKIEQNLLQWQHL--LFGGQPPQVDFNGNIY 313
           KF+ P    TNKI ++L   + L   FGG+  Q  FN N Y
Sbjct: 212 KFVYPDRPETNKIMEDLFNMEELESAFGGK-NQATFNINDY 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,560
Number of Sequences: 37544
Number of extensions: 322328
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)