Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2482
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin con...    28   5.0  
Z68270-6|CAE46688.1|  158|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical
           protein T06G6.3b protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 357 KTVNHYQLDGLCPIRVFRT--VSISRIQMKPAQAQLWKI*EELKKYFFL 497
           + VNH++LD  CPI++ ++  + +++ +++    QL    + LKK  ++
Sbjct: 181 RNVNHFKLDETCPIQIIKSERIKVAQNEIRELNKQLDAEQDPLKKLEYM 229


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 357 KTVNHYQLDGLCPIRVFRT--VSISRIQMKPAQAQLWKI*EELKKYFFL 497
           + VNH++LD  CPI++ ++  + +++ +++    QL    + LKK  ++
Sbjct: 209 RNVNHFKLDETCPIQIIKSERIKVAQNEIRELNKQLDAEQDPLKKLEYM 257


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 EEAELREKLNKETKKFILPLEEATNKIEQNLLQ 253
           EEAE  EKL K++KK   P ++A  K  Q+LL+
Sbjct: 587 EEAEQEEKLTKKSKK--TPKKKAAEKTSQSLLE 617


>AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein26 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +2

Query: 173 EKLNKETKKFI---LPLEEATNKIEQNLLQWQHLLFGGQPPQVDFNGNIY 313
           ++L K+ ++ +   +P  +A   +E N+L+W++++ G   P+  + G IY
Sbjct: 11  QRLKKDYQRLLKEPVPFMKAA-PLETNILEWRYIIIGA--PKTPYEGGIY 57


>Z68270-6|CAE46688.1|  158|Caenorhabditis elegans Hypothetical
           protein ZC410.5b protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 155 EEAELREKLNKETKKFILPLEEATNKIEQNLLQWQHLL 268
           E+ +  E L  + +K  L  EE + K E+N ++WQ+++
Sbjct: 80  EKVKGLEPLANDAQKETLKKEEGSAKFEENKVKWQNMV 117


>U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical
           protein F26A1.14 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 176 KLNKETKKFILPLEEATNKIEQNLLQWQHLLFGGQ 280
           K   E  + I  +E    ++++N L W+HL+ GG+
Sbjct: 124 KKRSEKDEEIGSIESKIMQLKENQLGWEHLVIGGE 158


>AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical
           protein Y46H3B.1 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 422 NADSSKYSDWAQP 384
           N DSS YS+WAQP
Sbjct: 115 NGDSSTYSNWAQP 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,692
Number of Sequences: 27780
Number of extensions: 316943
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)