Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2478
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    29   0.71 
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   2.9  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   3.8  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    26   6.6  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   6.6  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +1

Query: 196 ANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSK 375
           +N+ +LE+    K  +PDE +  +K+      GK +    +KK+ T    + F++   +K
Sbjct: 264 SNNFQLEIGTEAKSAAPDEPQEIIKS---VSGGKRRGKRKVKKYATTKDEEGFLV---TK 317

Query: 376 QEEVRAIYKEN 408
           +EEV   + E+
Sbjct: 318 EEEVWESFSED 328


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 534 CGNHNFVRTVCC 499
           CG HNF + VCC
Sbjct: 456 CGYHNFAKNVCC 467


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 705 GVVQSVSVDTLCDFIVSCRFSRGFE 631
           G+V S+ VDT C F+ S   +RG++
Sbjct: 487 GLVSSLYVDTSCQFMFSASGNRGWQ 511


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -1

Query: 462 FWWWR---WQFVFWNQNS*YTVFFV 397
           + +WR   WQF++WN    +   F+
Sbjct: 49  YQYWRILLWQFIYWNSTEVFQALFI 73


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 720 IWFPKGVVQSVSVDTLCDFIVSC 652
           +WF  G+ QS +   +  FIV C
Sbjct: 215 VWFETGIPQSFAWSLIAPFIVGC 237


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 LPPGSKQEEVRAIYKENGI 414
           L P S ++ VR IYKENGI
Sbjct: 197 LRPESYRKVVRRIYKENGI 215


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 433 LEPKQLIYRFLCKSLALLPVCCRAVKR 353
           L+P  + YR L K+  LLP  C  + +
Sbjct: 397 LKPTHVTYRSLLKAYCLLPSTCEQISQ 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,122
Number of Sequences: 5004
Number of extensions: 49892
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)