Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2476
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1033 + 10629897-10632311,10633874-10633879                       29   3.2  
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587...    28   7.4  
08_01_0279 - 2277487-2278161,2278513-2278662,2278749-2278843,227...    27   9.8  

>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 445 VLHKVTKQQDDDHRTGSCRRH 507
           V H      DDDHRT  CR H
Sbjct: 226 VAHPADDDDDDDHRTRRCRTH 246


>03_05_0429 -
           24157060-24157671,24158000-24158468,24158679-24158752,
           24159231-24159280,24159368-24159449,24159526-24159575,
           24159666-24159708,24159804-24159884,24159988-24160033,
           24160151-24160197,24160358-24160423,24160701-24160767,
           24160913-24160998
          Length = 590

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 470 RTTTIVRGPVAGTPDESIISDEEEPPVARFNN-RRKSVFAETYDPRKRMILIIR 628
           RT++IV+ P   TP ++I + + EPP   +N   R  + + T  P  R   +IR
Sbjct: 352 RTSSIVKTPKR-TPSKTITTPQLEPPKVSYNRVNRSELLSRT--PVNRSARVIR 402


>08_01_0279 -
           2277487-2278161,2278513-2278662,2278749-2278843,
           2279367-2279865
          Length = 472

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 397 KLSAGAAWGRDQLRGRVLHKVTKQQDDD 480
           K+S+  A  R + RGRVL K   Q DDD
Sbjct: 19  KVSSSGATARRRSRGRVLGKRRLQADDD 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,984
Number of Sequences: 37544
Number of extensions: 323427
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)