Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2476
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    28   6.6  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical
           protein F39H12.3 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 338 QGGRIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNR--TTTIVRGPVA 502
           Q  +  VP DLR IL       L  QP DV  +   FF     +R     I++ P A
Sbjct: 3   QRNKCFVPHDLRPILEALAREVLRSQPSDVAEFGHMFFDEYLKHRRENRNILKDPAA 59


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 521 IISDEEEPPVARFNNRRKSVFAETYDPR 604
           ++ DE + P  RF N+  S+F E+++P+
Sbjct: 512 LVYDEFQKPDNRFRNKCLSIFPESFNPK 539


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 521 IISDEEEPPVARFNNRRKSVFAETYDPR 604
           ++ DE + P  RF N+  S+F E+++P+
Sbjct: 512 LVYDEFQKPDNRFRNKCLSIFPESFNPK 539


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 424 RDQLRGRVLHKVTKQQDDDHRTGSCRR 504
           + QLR R+L K  KQQ D   TG   R
Sbjct: 123 KQQLRERLLRKSIKQQSDQDLTGGSSR 149


>U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical
           protein ZC404.1 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 496 RTPYDGRRPVVL*PCEELDRVVDHVPRLLQQ 404
           R PY  R+P +  P  +L+ +  HV RL++Q
Sbjct: 22  RRPYRPRKPYLPRPPSQLEIIQQHVMRLIKQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,307
Number of Sequences: 27780
Number of extensions: 279033
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)