Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2470
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.64
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.6
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 27 3.4
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 3.4
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 3.4
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 4.5
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 26 6.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.9
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.9
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = +2
Query: 260 PAEAHRDSGEEPXSGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKG 424
P H + GE + GE P +H EL H H ++ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 294 PXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 413
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 576 ATLPGQWRRTATPDFIQXLTISPPYAIXSE 665
A LP R ATPD + T PYA +E
Sbjct: 266 AVLPDGEERYATPDLVPDTTAQYPYASATE 295
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 617 IRGCCTSPLPRQGRHCTK 564
+R C +SP PRQG C K
Sbjct: 70 VRDCPSSPNPRQGAECYK 87
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 288 KNPXPDKDAIEAEKEKNKFLNGIE--NFDPTKL-KHTETCEKNPLPTKDVIEQEKS 446
K+P P + E EK K L GIE + D K+ K T ++ TKD IE + S
Sbjct: 8 KSPNPTIEEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFS 63
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 318 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 449
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 223 FWVFXVXTSSADGSTIFSLVSTSRRQLVLKPSS*LLQVCGDLGEVFQG 80
FW + + S G I SL + RQ + +PSS V L VFQG
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSSGASSVPDILFCVFQG 130
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 183 LPSAEDVXTXKTQKSLFDGIEKFDSSQLKHTE 278
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 327 KEKNKFLNGIENFDPTKLKHTETCEKN 407
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 267 KHTETQEKNPXPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIE 434
+H E+ E P ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 435 QEKSA 449
+++ A
Sbjct: 861 KDRYA 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,961
Number of Sequences: 5004
Number of extensions: 42156
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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