Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2470
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    75   6e-14
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    28   5.6  
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 41/99 (41%), Positives = 55/99 (55%)
 Frame = +3

Query: 150 LRDVDTNEKIVLPSAEDVXTXKTQKSLFDGIEKFDSSQLKHTETQEKNPXPDKDAIEAEK 329
           L+ V+T EK VLP+ EDV   K        IE FDS++L  T  +EK   P  D I+ EK
Sbjct: 24  LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83

Query: 330 EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 446
           +  +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 84  QHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 36/91 (39%), Positives = 46/91 (50%)
 Frame = +3

Query: 123 QLEGFNTSCLRDVDTNEKIVLPSAEDVXTXKTQKSLFDGIEKFDSSQLKHTETQEKNPXP 302
           ++E F+++ L      EKIVLPSA+D+   K    L D I  F S  LK TET EKN  P
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLP 112

Query: 303 DKDAIEAEKEKNKFLNGIENFDPTKLKHTET 395
               +  EK     L    +FD + L H ET
Sbjct: 113 SPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +3

Query: 261 QLKHTETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
           +LK  ET EKN  P K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 441 K 443
           K
Sbjct: 83  K 83


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = +3

Query: 153 RDVDTNEKIVLPSAEDVXTXKTQKSLFDGIEK-FDSSQLKHTETQEKNPXPDKDAIEAEK 329
           R++ +   ++    E +   KT+   F+ I+K  +S++ + + TQEK     K  I A++
Sbjct: 387 RELQSLTSLMAERDEQIEELKTKMFSFEMIKKDHESAKNELSRTQEKLDQMGKHLIMADQ 446

Query: 330 EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 428
           + + F +  E+ + ++ +  E C +  +  +D+
Sbjct: 447 QCSTFKSLKESAEGSRRRAIEQCNEMVVRIRDL 479


>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 171 EKIVLPSAEDVXTXKTQKSLFDG-IEKFDSSQLKHTETQEKNPXPDKDAIEAEKEKNKFL 347
           EK  L   + +   K +K   D  +E+    + K  E +EK    +++ ++ ++E+NK  
Sbjct: 120 EKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRK 179

Query: 348 NGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 443
              E     K +  E  ++     ++ IE+ K
Sbjct: 180 KEEEEKKEAKRREDEEKKEAKRKEEEAIEERK 211


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 KHTETQEKNPXPDKDAIEAEKEKNKFLNGIE--NFD 368
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 240 IEKFDSSQLKHTETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 419
           IE+F     K T   ++N    ++  E++ E+  +LN I +F   +  H        LP+
Sbjct: 98  IEQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPS 157

Query: 420 KD 425
            +
Sbjct: 158 SN 159


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +3

Query: 246 KFDSSQLKHTETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKD 425
           K DSS++K ++T   +P P  D I +++   +    +  F     K    C    LP  D
Sbjct: 551 KLDSSKVKPSQT--SSPNPYTDTILSDEHLTQLARDLSKFKSNLAK----CFGTKLPADD 604

Query: 426 VIEQEK 443
           V   EK
Sbjct: 605 VTSDEK 610


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 168 NEKIVLPSAEDVXTXKTQKSLFDGIEKFDSSQLKHTETQEKNPXPD---KDAIEAEKEKN 338
           NE   L +++D    ++  + FD      SS  K T+T+  +P PD   K  I +EK  +
Sbjct: 214 NENSALVTSKDDELFESSMTSFDTSTHSRSSGRKRTQTRPYSPTPDSVSKPLIPSEKSLH 273

Query: 339 KF 344
            F
Sbjct: 274 FF 275


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 276 ETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 446
           E ++K     K    +E+E       +E+ +PTKLK  E  +K     ++  ++E++
Sbjct: 338 EEEKKEEGETKKEESSEEEDGVLKVNLEDIEPTKLKSQEDAKKKEGDEEEEKDEEEA 394


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 276 ETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 446
           E ++K     K    +E+E       +E+ +PTKLK  E  +K     ++  ++E++
Sbjct: 338 EEEKKEEGETKKEESSEEEDGVLKVNLEDIEPTKLKSQEDAKKKEGDEEEEKDEEEA 394


>AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical
           protein Y76B12C.4 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 234 DGIEKFDSSQLKHTETQEKNPXPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 413
           +  EK    + +  +T EKN   DK+  EAEKE+ K     +     K K     E+   
Sbjct: 68  EAAEKEKEKEKEKEKTHEKNEA-DKEEKEAEKEEEKEEKPPKEVTEEKEKEK---EREKT 123

Query: 414 PTKDVIEQ 437
            TKD +E+
Sbjct: 124 KTKDELEE 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,279
Number of Sequences: 27780
Number of extensions: 247835
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)