Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2468
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   2.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   3.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    26   6.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   6.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.9  

>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 380 HACDNQLNVTIKYHGKCDPCSEHECA 457
           H C  + N+ +K  G C+ C +H CA
Sbjct: 61  HVCHRKNNMRLKV-GTCESCKKHTCA 85


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 100 WTGCRTGAMGSTVPQGHTLGTPTAKSFFTRFXP 2
           W    T    S +P GH LG P + +    F P
Sbjct: 782 WQNWVTELSSSNIPLGHALGNPESNNSSNSFKP 814


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 PLYAPLQAGRIGTIATCEKRPVKGVSTYGLNTK 209
           PL AP   G +   +    RPV   +T G+NT+
Sbjct: 733 PLSAPSDVGSLPRASNSPSRPVMHPNTQGINTE 765


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 510 PHRQVGDLTSFS*QTPPSAHSCSEHGSHFP 421
           PH  V    S+  Q+P S H+CS + S FP
Sbjct: 106 PH-DVASHPSYMVQSPTSYHACSNNQSPFP 134


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 600 SRAELNNSLL*RTVENALXHNTRADS 677
           S   LNN  + RT+EN+L   T +D+
Sbjct: 39  SSKSLNNDRISRTIENSLQKETNSDN 64


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 296 RCPRSCQRRKPVCGTDGKEYLSTCHLDKHACDNQLNVTIK 415
           +C +  +R+ P    +G++YLST  +  H   ++LN+ ++
Sbjct: 554 QCTKVAERKDP----EGQDYLSTITMLYHVRQHELNLALR 589


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
 Frame = +2

Query: 233 CTSVTCPTGAR-C--VSTYGQAECR---CPRSCQRRKPVCGTDGKEYLSTCHLDKHACDN 394
           C S  C + +R C  ++ +    C    C  SCQ     C    K+Y+         C N
Sbjct: 415 CASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTCFISAKDYIDGTRCRGGLCYN 474

Query: 395 QLNVTIK 415
            + V I+
Sbjct: 475 GVCVPIE 481


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 300 HLHSACPYVETHLAPVGQVTLVHGSPASHSPS 205
           ++ SA P  ETH+A     +L + + + H PS
Sbjct: 61  NISSAAPLDETHIATKASASLRNNNVSPHIPS 92


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 350 EYLSTCHLDKHACDNQLNVTIKYHGKCDPCSEHECADG---GVCQLNEVRSPT 499
           EY   C  D+ +C   ++   KY+GK DP +++    G      ++N++R+ T
Sbjct: 119 EYGYPCIRDEKSCVT-ISPIPKYYGKVDPVAQYSYTKGLPENEREVNKLRNDT 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,930
Number of Sequences: 5004
Number of extensions: 64083
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)