Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2468
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 36 0.041
01_06_1092 + 34469732-34470118 35 0.071
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 32 0.38
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 30 1.5
04_01_0377 - 4970034-4970687 30 2.0
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 2.7
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402... 29 3.5
03_06_0082 - 31522369-31522773 29 3.5
10_08_0634 - 19452980-19453206,19453310-19453385 29 4.7
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 29 4.7
06_03_0085 + 16431503-16431568,16431981-16432152,16432402-164324... 29 4.7
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 28 6.2
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 28 6.2
06_03_1409 - 29966787-29966990,29967150-29967413,29968098-299682... 28 6.2
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 28 8.2
09_06_0281 + 22014394-22015534,22016041-22017056 28 8.2
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 28 8.2
03_02_0535 + 9277995-9278049,9278140-9278274,9278722-9278788,927... 28 8.2
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 28 8.2
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 35.5 bits (78), Expect = 0.041
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 188 NLRIKHEGECEAGDPCTSVT-CPTGARCVSTYGQAECRCPRSCQRRKPVCGTDGKEYLST 364
N +K G C D C C TG+RC +T G C+C R P G DGK
Sbjct: 307 NPYLKGNGGCTDIDECKEPDRCSTGSRCHNTEGYYYCKC------RFPRRG-DGKVNGKG 359
Query: 365 CHLDKH 382
CHL K+
Sbjct: 360 CHLPKY 365
>01_06_1092 + 34469732-34470118
Length = 128
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/52 (40%), Positives = 21/52 (40%)
Frame = +2
Query: 212 ECEAGDPCTSVTCPTGARCVSTYGQAECRCPRSCQRRKPVCGTDGKEYLSTC 367
E E DPC A VS G CP C R PVCG DG Y C
Sbjct: 35 EAEVSDPC--------AAPVSDGGSEAQLCPVRCFRPDPVCGADGVTYWCGC 78
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +2
Query: 359 STCHLDKHACDNQ-LNVTIKY---HGKCDPCSEHECADGGVCQLNEVRSPTCRCGP 514
S C + K DN N+T + DPC C GG C E S C C P
Sbjct: 76 SPCTIPKCTFDNACFNITFNFPRGFPLTDPCVAINCGSGGECVKEEGLSYHCACSP 131
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 227 DPCTSVTCPTGARCVSTYGQA-ECRC 301
DPC ++ C +G CV G + C C
Sbjct: 104 DPCVAINCGSGGECVKEEGLSYHCAC 129
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 410 IKYHGKCDPCS-EHECADGGVCQLNEVRSPTCRCGPSCDLIVRPGSAVCGSDYKDYPSEC 586
+++ G D C + C C L+ P+C C P DLI G A G EC
Sbjct: 279 VEWIGPSDRCHVKGACGFNSYCVLDRDAQPSCLCPPGFDLI-DAGDAAGGCTASSGAGEC 337
>04_01_0377 - 4970034-4970687
Length = 217
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Frame = +2
Query: 209 GECEAGDPCTSVTCPTGARCVSTYGQAECRCPRSCQRRKPVCGTDGKEYLSTCHLDKHAC 388
G G C S C + RC S G A C + C + CG G EY + C
Sbjct: 45 GRDYCGTGCQSGACCSSQRCGSQGGGATCSNNQCCS-QYGYCGF-GSEYCGS-GCQNGPC 101
Query: 389 DNQLNVTIKYHGKCDPCSEHECADGGVCQL-NEVRSPTCRCGPSC 520
+ +G+ P + C+ G C L +E C+ G C
Sbjct: 102 RADIKCGRNANGELCP-NNMCCSQWGYCGLGSEFCGNGCQSGACC 145
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +2
Query: 248 CPTGARCVSTYGQAECRCP--RSCQRRKPVCGTD 343
CP GA C +T G C CP R + C D
Sbjct: 1422 CPKGATCRNTEGWYHCSCPVGRKLAKETNTCNPD 1455
>11_08_0005 +
27536091-27536761,27539697-27539890,27540097-27540255,
27540385-27541493
Length = 710
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 248 CPTGARCVSTYGQAECRCPRSCQRRKPVCGTDGKEYLSTCHLDK 379
C TG+RC T G C+C R P G DGK CHL K
Sbjct: 299 CSTGSRCHDTEGGYYCKC------RFPRRG-DGKINGKGCHLPK 335
>03_06_0082 - 31522369-31522773
Length = 134
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 494 PTCRCGPSCDLIVRPGSAVCG 556
P C CG SC ++ +A+CG
Sbjct: 80 PQCHCGASCQMMQNMQNAICG 100
>10_08_0634 - 19452980-19453206,19453310-19453385
Length = 100
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 8 EACEKTFCRWGAECVSLGDGR 70
+ C CR G ECVSLG GR
Sbjct: 72 DVCHYGGCRRGGECVSLGFGR 92
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 212 ECEAGDPCT---SVTCPTGARCVSTYGQAECRC 301
+CE D C + TCP C +T+G EC+C
Sbjct: 245 KCEDLDECKEKLACTCPN-CHCKNTWGNYECKC 276
>06_03_0085 +
16431503-16431568,16431981-16432152,16432402-16432464,
16432792-16433332,16433419-16433543,16433988-16434100,
16434565-16434678
Length = 397
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 344 GKEYLSTCHLDKHACDNQLNVTIKYH 421
GKE L C L+KH D + +T +H
Sbjct: 93 GKEVLDVCELEKHIEDMHVLITTPFH 118
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +2
Query: 431 DPCSEHECADGGVCQLNEVRSPTCRCGPSCDLIVRPGSAVC 553
DPC C DGG C+ + C C ++ S C
Sbjct: 11 DPCLLQYCGDGGSCERSSEFGHRCACHDGFQNLLNDTSYPC 51
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 185 LNLRIKHEGECEAGDPCTSVTCPTGARCVSTYGQAECRCPRSCQRRKPVCGTDGKEYL 358
L+L + EC+ PCT + C++T G C C R VC ++
Sbjct: 332 LSLFLADIDECQDAHPCTGI-------CINTQGSYTCTCQRGKHLIDGVCKQSSSSWI 382
>06_03_1409 -
29966787-29966990,29967150-29967413,29968098-29968241,
29969000-29969329
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 249 ALRGQGVSQRMGKLNAGVLVVVKDENLSVGQMARSICPHVI 371
AL G+ R+ K +G+LVV KDE+ S Q+A H I
Sbjct: 224 ALVRPGIVHRLDKGTSGLLVVAKDEH-SHAQLAEQFKLHTI 263
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 482 HSADKLLHRRIRAPNMDRIF 423
H+A LLHRRI P +DR F
Sbjct: 92 HAAAPLLHRRILLPEVDRHF 111
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 209 GECEAGDPCTSVTCPTGARCVSTYGQAECRCPRSCQ 316
G C+ D C G C +T G +CRCPR +
Sbjct: 332 GGCQDIDECKLAGRCYG-ECTNTPGDYQCRCPRGAR 366
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -1
Query: 484 FIQLTNSSIGAFVL---RTWIAFSMVFDSHVQLIVAGMLVEMTCGQI 353
FIQLT + +G FV+ + W+ ++ S +I+AG + T ++
Sbjct: 193 FIQLTATFVGGFVVSFAKGWLLSCVMLSSIPPIIIAGATMSWTISKL 239
>03_02_0535 +
9277995-9278049,9278140-9278274,9278722-9278788,
9278948-9279044,9279156-9279252,9279640-9279680,
9280314-9280379,9281776-9281848,9282390-9282502,
9282916-9283089
Length = 305
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 412 DSHVQLIVAGMLVEMTCGQILLAICPTDRFSSLTTTR 302
D + + + E C + AICP+++FSSL R
Sbjct: 91 DPGIVIYESSFFEEAGCKDFVEAICPSEKFSSLPRVR 127
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 154 AMVPIRPACSGAYRGS*CWTGCRTGAMGSTVPQGHT 47
A++ ++ +GA S CW CRTG +++ + T
Sbjct: 8 AVMAVQLVVAGASTSSGCWRRCRTGTAHTSITRRST 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,101,685
Number of Sequences: 37544
Number of extensions: 490444
Number of successful extensions: 1335
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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