Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2465
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.85 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   7.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.9  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   7.9  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 117 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 290
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 291 LKGCISSVLQ 320
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 189 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 368
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 369 AQXSTNQLI 395
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 342 NEYANHINDAQXSTNQLIDFVCYKDGDRIALFIAEGGPECFQQ---KTENLKTCFLNLKQ 512
           NE+    ++++   N  +D++C  D   +   +++   +CF Q     +  +      K+
Sbjct: 269 NEFTGFNSNSEWIPNDTVDYICNSDASSVVSNLSD-FEDCFDQFGVYDKEYEKKIEKTKR 327

Query: 513 SFPTVESANNLSP 551
           +FP  +S+    P
Sbjct: 328 NFPKFQSSATYPP 340


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 546 SSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 442
           SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 379 SSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 NEYANHINDAQXSTNQLIDFVCYKDGD 422
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 379 LFWASLMWFAYSLPTQGRTPCSTELIQP 296
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,817
Number of Sequences: 5004
Number of extensions: 49136
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)