Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2463
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 103 2e-23
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 103 2e-23
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 103 2e-23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 44 1e-05
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.061
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 7.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 7.0
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 9.3
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 9.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 103 bits (246), Expect = 2e-23
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 201 IKAV 212
IKAV
Sbjct: 436 IKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 103 bits (246), Expect = 2e-23
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 201 IKAV 212
IKAV
Sbjct: 436 IKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 103 bits (246), Expect = 2e-23
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGV
Sbjct: 376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGV 435
Query: 201 IKAV 212
IKAV
Sbjct: 436 IKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG- 197
K+D+ T + ++ P G I L P+C+E F+++ +GRF +RD TVAVG
Sbjct: 598 KLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGK 656
Query: 198 VIKAVN 215
V+K ++
Sbjct: 657 VVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.061
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 114 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 206
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 338 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 433
G S E S+ IFY FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 271 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 161
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 244 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 122
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 272 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 376
+ +A A+N +I TT + K + E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 91 MAASPDLMDFGLTSVDLPVRRST 23
++ +PDL D L+SVD P++ +T
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNT 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,682
Number of Sequences: 5004
Number of extensions: 34235
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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