Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2463
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 98 3e-21
03_01_0547 + 4093196-4093657,4094267-4095148 98 3e-21
03_01_0544 + 4082528-4082989,4083585-4084466 98 3e-21
03_01_0543 + 4076981-4077442,4078145-4079026 98 3e-21
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 48 4e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 45 3e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 45 3e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 39 0.002
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.1
07_03_0634 + 20125242-20125688 28 4.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 4.1
01_06_0191 - 27334412-27335155 28 5.4
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 7.1
01_02_0102 - 11148219-11148563,11148650-11149534 27 7.1
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 9.4
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 201 IKAV 212
IK V
Sbjct: 426 IKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 201 IKAV 212
IK V
Sbjct: 426 IKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 201 IKAV 212
IK V
Sbjct: 426 IKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 21 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 200
K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 201 IKAV 212
IK V
Sbjct: 426 IKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 24 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 203
++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+AVG++
Sbjct: 588 LEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIV 647
Query: 204 KAV 212
V
Sbjct: 648 SRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 33 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 203
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 33 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 203
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 9 KSKXKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 170
K K + D + K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 363 KKKKEADPKK-KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 422 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 342
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = -2
Query: 313 CMKNCAVNS-SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 137
C + A S S++ + A ++A T PP ++LT + L R P G
Sbjct: 35 CANSVAYLSLSAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVK 94
Query: 136 WKDSTHRGLE---GTKLTMAASPDLMDFGLTSVDLP 38
WK +E GT P+ G +V LP
Sbjct: 95 WKGRREHFVERLVGTAHLPRRRPERQPQGSGAVPLP 130
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 253 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 77
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 76 DLMDFGLTSVDLPVRR 29
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = -2
Query: 292 NSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTHRG 113
N+ S PL +S V LP +L + P A + TAK +GG++ S G
Sbjct: 164 NALSAVKPLAVYSVDKVLLP----FELFGVKAPAAAPT--ASTAKPKKGGSTEAASGPAG 217
Query: 112 LEGTKLTMAASPDLMDFGLTSV 47
E + T AAS + +G+ +
Sbjct: 218 AEDAEPTGAASARAVGWGVAGL 239
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 205 LMTPTATVCLMSRTAKRPRGGNSWKDST 122
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 27.5 bits (58), Expect = 7.1
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Frame = -2
Query: 337 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRT 164
F+ MK R + N V S S+FLP+V F+A PPP ALM V + R+
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNA---FNPPPPEF---ALMKSDPPV-VQRRS 311
Query: 163 AKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVD 44
R G S H A PD L S D
Sbjct: 312 PHRQTGQGSGGPKIHFEARPDTSNPAGQPDSRKRKLMSSD 351
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 271 PLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGNSW 134
P A L +L PP + T+L+TP A L+S + R RG +S+
Sbjct: 40 PRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHSSF 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,950,417
Number of Sequences: 37544
Number of extensions: 220853
Number of successful extensions: 699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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