Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2463
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 106 1e-23
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 106 1e-23
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 106 1e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.014
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.014
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.1
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 27 8.4
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 8.4
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 106 bits (254), Expect = 1e-23
Identities = 50/66 (75%), Positives = 56/66 (84%)
Frame = +3
Query: 15 KXKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 194
K KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 342 KEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 401
Query: 195 GVIKAV 212
GVIK+V
Sbjct: 402 GVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 106 bits (254), Expect = 1e-23
Identities = 50/66 (75%), Positives = 56/66 (84%)
Frame = +3
Query: 15 KXKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 194
K KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 376 KEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 435
Query: 195 GVIKAV 212
GVIK+V
Sbjct: 436 GVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 106 bits (254), Expect = 1e-23
Identities = 50/66 (75%), Positives = 56/66 (84%)
Frame = +3
Query: 15 KXKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 194
K KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 376 KEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 435
Query: 195 GVIKAV 212
GVIK+V
Sbjct: 436 GVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 24 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 200
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 201 IKAV 212
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 24 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 203
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585
Query: 204 KAV 212
+ V
Sbjct: 586 EKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 24 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 203
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603
Query: 204 KAV 212
+ V
Sbjct: 604 EKV 606
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 328 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 173
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 274 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 122
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 353 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 460
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 214 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 113
+ AL P T ++CL + K P GN+ D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 308 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 424
H TA L S K V+ K+ F+ + ++ C+ LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,698
Number of Sequences: 27780
Number of extensions: 196500
Number of successful extensions: 552
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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