Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2460
(637 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p pro... 32 0.75
AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-P... 32 0.75
AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-P... 32 0.75
AY051997-1|AAK93421.1| 721|Drosophila melanogaster LD46453p pro... 31 1.3
AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein... 31 1.3
AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA... 31 1.3
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 29 5.3
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 29 5.3
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 29 5.3
AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P... 29 7.0
>BT016098-1|AAV36983.1| 1873|Drosophila melanogaster LD34837p
protein.
Length = 1873
Score = 31.9 bits (69), Expect = 0.75
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 325 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 185
S+ + + + + KK+ EKRPP + GG H+H H TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224
>AE014296-2299|ABC66150.1| 1557|Drosophila melanogaster CG17689-PB,
isoform B protein.
Length = 1557
Score = 31.9 bits (69), Expect = 0.75
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 325 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 185
S+ + + + + KK+ EKRPP + GG H+H H TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224
>AE014296-2298|AAF49803.3| 1873|Drosophila melanogaster CG17689-PA,
isoform A protein.
Length = 1873
Score = 31.9 bits (69), Expect = 0.75
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 325 SIDGAISSSEPIEKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTH 185
S+ + + + + KK+ EKRPP + GG H+H H TH
Sbjct: 181 SLSNSSTGAASVSSKKS---EKRPPSANSTASGGGHHLHHHHLHQTH 224
>AY051997-1|AAK93421.1| 721|Drosophila melanogaster LD46453p
protein.
Length = 721
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 11 RXRERDPLRRSGEKFNRQWGGAAPLR 88
R RE+ P RS EKF+R+ GGA+ R
Sbjct: 678 RHREKSPRERSHEKFDRERGGASGSR 703
>AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein
protein.
Length = 1641
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 11 RXRERDPLRRSGEKFNRQWGGAAPLR 88
R RE+ P RS EKF+R+ GGA+ R
Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623
>AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA
protein.
Length = 1641
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 11 RXRERDPLRRSGEKFNRQWGGAAPLR 88
R RE+ P RS EKF+R+ GGA+ R
Sbjct: 1598 RHREKSPRERSHEKFDRERGGASGSR 1623
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 256 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 134
P + +RCRG DH+H K T +I SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 256 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 134
P + +RCRG DH+H K T +I SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 256 PPHQEANRCRGGDHIHLHL--KRPTHQQQACYNIQTRSSSSCS 134
P + +RCRG DH+H K T +I SSSS +
Sbjct: 145 PQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAA 187
>AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA
protein.
Length = 2282
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 289 EKKKAMGGEKRPPHQEANRCRGGDHIHLHLKRPTHQQQACYNIQTRSSSS 140
+KKK + +KR + + C K+PT + Q C N Q + S +
Sbjct: 591 KKKKLISTKKRKSSRSCSCCSRTSSRKRSAKKPTTKSQVCENCQCKRSDA 640
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,535,410
Number of Sequences: 53049
Number of extensions: 494612
Number of successful extensions: 1555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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