Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2459
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    32   0.088
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.12 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.7  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +1

Query: 382 KLTGSVTNLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 561
           +L  S   L ++      S  S  S L+ +  +E +    +  V++ CE  F  +    Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203

Query: 562 LSGEFLDEQYKGQRD-LAGKASTLKKMMDK 648
           L      E  KG+ D L  + + LK+ +DK
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDK 233


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 529 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 642
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 463 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 609
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 454 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 591
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 243 NPVLSHG-GLLLDRYGEPPRLREAILRC 323
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 475 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 588
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 525 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQ 632
           R  +Q + PG L     P+RT   P  P+R G+ PQ
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQ 550



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 498 QHPGGHQDLREQ---LQRLPPGRLLVRG--IPRRTVQGPARPRRQGLDPQ 632
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 576 PRRTVQGPARPRRQGLDPQENDG 644
           P+RT   P  P+R G+ PQ   G
Sbjct: 731 PQRTGMQPMAPQRTGMQPQMTGG 753


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 129 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 22
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,178
Number of Sequences: 5004
Number of extensions: 43170
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)