Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2459
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 77 1e-14
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 62 4e-10
12_02_0911 + 24236374-24237582 36 0.022
09_02_0549 + 10485415-10486107 31 0.64
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 31 0.64
01_06_1162 + 35010414-35011106 31 0.84
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.1
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 29 2.6
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.6
09_01_0142 - 2103224-2103864,2104264-2104399 29 3.4
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.4
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 29 4.5
04_03_0007 + 9287927-9288619 29 4.5
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 4.5
10_04_0004 + 7389321-7390013 28 6.0
06_03_0355 + 19822110-19824491 28 6.0
04_03_0151 + 11905926-11906618 28 6.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 77.0 bits (181), Expect = 1e-14
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Frame = +1
Query: 196 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 375
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 376 RG---KLTGSVTNLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 546
RG +L VT L + P A+E AL LE V + + + S ND
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206
Query: 547 HLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKH 651
L D++ EFL+EQ + + ++ + L+++ H
Sbjct: 207 QLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH 241
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 62.1 bits (144), Expect = 4e-10
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Frame = +1
Query: 229 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 399
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 400 TNLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFL 579
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 580 DEQYKGQRDLAGKASTLKKMMDKH 651
+EQ + + ++ + L+++ H
Sbjct: 244 EEQVEAIKKISEYVAQLRRVGKGH 267
>12_02_0911 + 24236374-24237582
Length = 402
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 385 LTGSVTNLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 552
L VTNL+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 553 VDYLSGEFLDEQYKGQRDL 609
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>09_02_0549 + 10485415-10486107
Length = 230
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 399 NQPHHVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 572
N+ +VQ P Q ++ + + R P A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 573 IPRRTVQGPARP 608
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 378 GQADRLRNQPHHVQGPRQHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 533
G + + +QP ++Q P QH P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>01_06_1162 + 35010414-35011106
Length = 230
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 399 NQPHHVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 572
N+ +VQ P Q ++ + + R P A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 573 IPRRTVQGPARP 608
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 466 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 636
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 546 PPGRLLVRGIPRRTVQGPARPRRQG-LDPQENDGQARRPRRVHLS 677
PPG VR P++ Q P PRR+ P R P R HLS
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHLS 162
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 555
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 399 NQPHHVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 572
N+ +VQ P Q ++ + + R P A +HQ+ G +L G +L+R
Sbjct: 125 NRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSMLLRQ 184
Query: 573 IPRRTVQGPARP 608
P++ P RP
Sbjct: 185 HPQQVSPAPGRP 196
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 256 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 372
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 520 TCESSFNDYHLVDYLSGEFLDEQY-KGQRDLAGKASTL-KKMMDKHAXLGEFIFR 678
TC+SSFND + + ++G E + K Q DL + + KK D+ + EF+ R
Sbjct: 401 TCDSSFNDKPIRETVAGPLGKELFEKEQEDLLSDLNDIPKKACDRR--INEFVKR 453
>04_03_0007 + 9287927-9288619
Length = 230
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 411 HVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRGIPRR 584
+VQ P Q ++ + + R P A +HQ+ G +L G L+R P++
Sbjct: 101 NVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQHPQQ 160
Query: 585 TVQGPARP 608
+ P RP
Sbjct: 161 VLSAPGRP 168
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 177 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 28
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>10_04_0004 + 7389321-7390013
Length = 230
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 399 NQPHHVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 572
N+ +VQ P Q ++ + + R P A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 573 IPRRTVQGPAR 605
PR+ + P R
Sbjct: 157 HPRQVLSAPGR 167
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 304 AKLFFDAATEEREHATKLIDYLL-MRGKLTGSVTNLITYRAPANTSWESGASALEHALKL 480
A +F++ E + YL M + + +L + R W++ EH L +
Sbjct: 487 ASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHDLNV 546
Query: 481 ESDVTNSIREVIKTCESSFNDY 546
+ + R +K +SF++Y
Sbjct: 547 MAQLVTGYRRALKQNRASFDEY 568
>04_03_0151 + 11905926-11906618
Length = 230
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 399 NQPHHVQGPRQHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 572
N+ +VQ P Q ++ + + R P A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 573 IPRRTVQGPARP 608
PR+ P P
Sbjct: 157 HPRQASSAPGHP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,964
Number of Sequences: 37544
Number of extensions: 366447
Number of successful extensions: 1125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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