Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2458
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 122 3e-28
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 120 8e-28
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 118 5e-27
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 114 5e-26
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 7e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.26
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.1
02_05_0250 + 27153048-27154453,27154546-27154885 30 1.4
11_06_0437 - 23533218-23536382 29 2.4
05_01_0297 - 2314687-2316021 29 4.2
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 5.6
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 28 7.4
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 27 9.8
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 122 bits (293), Expect = 3e-28
Identities = 58/130 (44%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +3
Query: 123 RPCVKTVSLC*RVVHARLLKCPHPKPESTXHAKXHLVGIDIFNGKKYEDICPSTHNMDVP 302
RPC + + +V ++++ K HAK H V IDIFNGKK EDI PS+HN DVP
Sbjct: 1361 RPCKWSGNHASLLVDTKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVP 1420
Query: 303 HVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFXSGKELLCTVLKS 479
HV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ++ F GK+L+ TV+ +
Sbjct: 1421 HVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSA 1480
Query: 480 CGXECVXXVK 509
G E + +K
Sbjct: 1481 MGEEQICALK 1490
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 13/61 (21%)
Frame = +2
Query: 68 HTXXPAYSGASATFPMQCSALRKNGFVMLKGRPC-------------KIVEMSTSKTGKH 208
H A +GAS T+P Q +RKNG +++K RPC K+VE+STSKTGKH
Sbjct: 1330 HFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVSTSKTGKH 1389
Query: 209 G 211
G
Sbjct: 1390 G 1390
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 120 bits (290), Expect = 8e-28
Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Frame = +3
Query: 48 MGDIEEHTLXXRHTPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTXHAKXH 227
M D EEH + G P K + + ++++ K HAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 228 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP- 404
VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 405 DGDLGTQLRTDF-XSGKELLCTVLKSCGXECVXXVK 509
D L Q++ F GK+++ TV+ + G E + VK
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 118 bits (283), Expect = 5e-27
Identities = 52/100 (52%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = +3
Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
HAK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++D
Sbjct: 73 HAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDD 132
Query: 393 LKIP-DGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVK 509
L++P D L Q++T F GK+L+ TV+ + G E + +K
Sbjct: 133 LRLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 4/52 (7%)
Frame = +2
Query: 68 HTXXPAYSGASATFPMQCSALRKNGFVMLKGRPC----KIVEMSTSKTGKHG 211
H A +GAS T+P Q +RKNG++++K RPC K+VE+STSKTGKHG
Sbjct: 21 HFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHG 72
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 114 bits (275), Expect = 5e-26
Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +3
Query: 150 C*RVVHARLLKCPHPKPESTXHAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQL 329
C + ++++ K HAK H V IDIF KK EDI PS+HN DVPHV R +YQL
Sbjct: 67 CYELYSDKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQL 126
Query: 330 TDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXV 506
DIS+DG+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + G E + +
Sbjct: 127 IDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICAL 186
Query: 507 K 509
K
Sbjct: 187 K 187
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 68 HTXXPAYSGASATFPMQCSALRKNGFVMLKGRPCK 172
H A +GAS T+P Q +RKNG++++K RPCK
Sbjct: 8 HFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +3
Query: 303 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFXSGKELLCTVLK 476
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 477 SCG 485
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 90 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 203
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 294 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 413
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 366 ADNGDLREDLKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKAN 515
A GD DL IPD + TQ+ T+ S C V S G C V A+
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPAS 296
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 350
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 327 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFXSGKELLCTVLKSCG 485
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +3
Query: 267 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 437
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 438 FXSGKE 455
SGKE
Sbjct: 293 AASGKE 298
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 10 YHSCTVVK-FKTQQWVTSKNTHXXTGILRGL 99
YHS +V F + WVT + T +LRGL
Sbjct: 230 YHSINIVNNFSCRAWVTVSQSFVRTELLRGL 260
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 402 PDGDLGTQLRTDFXSGKELLCTVLKSCG 485
PDGDL ++R SGKEL L G
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIG 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,874
Number of Sequences: 37544
Number of extensions: 360451
Number of successful extensions: 993
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -