Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2458
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   178   5e-45
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   177   1e-44
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   177   1e-44
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   177   1e-44
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   177   1e-44
AE014298-591|AAF45913.2|  942|Drosophila melanogaster CG32778-PA...    28   9.6  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  178 bits (434), Expect = 5e-45
 Identities = 79/105 (75%), Positives = 90/105 (85%)
 Frame = +3

Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
           HAK H+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLRED
Sbjct: 54  HAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLRED 113

Query: 393 LKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKANTXLD 527
           LK+P+G+LG QLR DF SGK+LLCTVLK+CG ECV  +K NT LD
Sbjct: 114 LKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALD 158



 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 89  SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
           SGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHG
Sbjct: 13  SGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHG 53


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  177 bits (430), Expect = 1e-44
 Identities = 78/105 (74%), Positives = 90/105 (85%)
 Frame = +3

Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
           HAK H+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLRED
Sbjct: 54  HAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLRED 113

Query: 393 LKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKANTXLD 527
           LK+P+G+LG QLR DF SGK+LLCTVLK+CG ECV  +K NT LD
Sbjct: 114 LKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALD 158



 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 89  SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
           SGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHG
Sbjct: 13  SGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHG 53


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  177 bits (430), Expect = 1e-44
 Identities = 78/105 (74%), Positives = 90/105 (85%)
 Frame = +3

Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
           HAK H+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLRED
Sbjct: 54  HAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLRED 113

Query: 393 LKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKANTXLD 527
           LK+P+G+LG QLR DF SGK+LLCTVLK+CG ECV  +K NT LD
Sbjct: 114 LKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALD 158



 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 89  SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
           SGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHG
Sbjct: 13  SGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHG 53


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  177 bits (430), Expect = 1e-44
 Identities = 78/105 (74%), Positives = 90/105 (85%)
 Frame = +3

Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
           HAK H+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLRED
Sbjct: 54  HAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLRED 113

Query: 393 LKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKANTXLD 527
           LK+P+G+LG QLR DF SGK+LLCTVLK+CG ECV  +K NT LD
Sbjct: 114 LKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALD 158



 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 89  SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
           SGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHG
Sbjct: 13  SGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHG 53


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  177 bits (430), Expect = 1e-44
 Identities = 78/105 (74%), Positives = 90/105 (85%)
 Frame = +3

Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED 392
           HAK H+VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLRED
Sbjct: 54  HAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLRED 113

Query: 393 LKIPDGDLGTQLRTDFXSGKELLCTVLKSCGXECVXXVKANTXLD 527
           LK+P+G+LG QLR DF SGK+LLCTVLK+CG ECV  +K NT LD
Sbjct: 114 LKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALD 158



 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 89  SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
           SGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHG
Sbjct: 13  SGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHG 53


>AE014298-591|AAF45913.2|  942|Drosophila melanogaster CG32778-PA
           protein.
          Length = 942

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 CVKTVSLC*RVVHARLLKCPHPKPESTXHAKXH 227
           C++T+++    +H ++LKCP P      H + H
Sbjct: 28  CIRTIAVL--ALHEQILKCPTPGCNGRGHVQPH 58


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,338,749
Number of Sequences: 53049
Number of extensions: 618941
Number of successful extensions: 1897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)