Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2458
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 102 2e-22
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 100 1e-21
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 3.8
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 29 3.8
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 8.7
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 27 8.7
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 8.7
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 8.7
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 102 bits (245), Expect = 2e-22
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Frame = +3
Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLRE 389
HAK H+V IDIF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++
Sbjct: 91 HAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKD 149
Query: 390 DLKIPDGDLGTQLRTDFXSGK-ELLCTVLKSCGXECVXXVKANT 518
DLK+P+GDLG +R + +L V+ +CG E + K +T
Sbjct: 150 DLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/52 (71%), Positives = 40/52 (76%)
Frame = +2
Query: 56 HRRTHTXXPAYSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
H A SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHG
Sbjct: 39 HHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHG 90
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 100 bits (239), Expect = 1e-21
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Frame = +3
Query: 213 HAKXHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLRE 389
HAK H+V IDIF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++
Sbjct: 57 HAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKD 115
Query: 390 DLKIPDGDLGTQLRTDFXSGK-ELLCTVLKSCGXECVXXVKANT 518
DLK+PD +LG Q+R + + +L V+ + G E + K +T
Sbjct: 116 DLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/41 (87%), Positives = 38/41 (92%)
Frame = +2
Query: 89 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHG 211
SGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHG
Sbjct: 16 SGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHG 56
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 243 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 398
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 288 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FXSGKEL 458
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D + G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 459 LCTVLKSCGXEC 494
++K CG +C
Sbjct: 630 HAALVKECGDKC 641
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 87 TPGPQPPSPCNVRPCVKTV 143
TPGP P +PC+ P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 87 TPGPQPPSPCNVRPCVKTV 143
TPGP P +PC+ P V T+
Sbjct: 38 TPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 87 TPGPQPPSPCNVRPCVKTV 143
TPGP P +PC+ P V T+
Sbjct: 192 TPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 87 TPGPQPPSPCNVRPCVKTV 143
TPGP P +PC+ P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,047
Number of Sequences: 27780
Number of extensions: 303030
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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