Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2457
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0508 + 4027113-4028522                                           30   1.5  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    30   2.0  
09_02_0530 + 10285844-10287217                                         28   8.2  

>12_01_0508 + 4027113-4028522
          Length = 469

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 167 PQYGITLILFTRYLHLFT*KHQINKHAWNYASDLNSKNSRS*NNF 33
           P+Y +  +L    +H    KH  +   W  A D+ +K+ +S  N+
Sbjct: 400 PEYPVVSLLDPHIVHFVLHKHMYHDQVWMIAVDMRAKSVKSCKNY 444


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 575 YFHQEMLLCFNFMFNRILNSLSNDFKPVS 489
           YF  ++L+C+ F+ +  L+S+ ND +P +
Sbjct: 206 YFFYKVLMCYTFLLHFSLSSIGNDEQPTT 234


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 493 TGLKSLDRLFKILLNIKLKQSNISWWK 573
           TG  +LDRL ++L    L   +I+WWK
Sbjct: 176 TGHAALDRLLQVLSGNCLTGLSIAWWK 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,549
Number of Sequences: 37544
Number of extensions: 214043
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)