Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2449
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025...    29   2.6  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    27   6.1  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    27   8.1  

>04_04_1023 +
           30201374-30201487,30201601-30202285,30202402-30202506,
           30202561-30203939
          Length = 760

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 28  GSGPHXMSRRRT*RNTEPTVSPXTKADEQLVNKLKTGDFKTENEP 162
           G G    SRR      EP V+P T+      +K++TGD   E  P
Sbjct: 147 GEGRRGASRRA---RAEPVVAPTTRRRAAPTSKIETGDVAVEAPP 188


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 174 ILLQWFVFSLKVACLQFVHQLFISFRXRR-DSRLCVSSSS 58
           +L + F++  +   +  VHQ F+ F  +R  S+ CV +SS
Sbjct: 463 VLERTFIYPPEAVMVPMVHQAFVRFSSKRMCSQACVGNSS 502


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +3

Query: 21  LSWLRPSQXEQKENLKKHRADCLSEXES**TIGEQTEDRRL*D*KRTIEEVCSMYADQIT 200
           +S LR  +    E+++  + D  SE E    +GE  E+R++    R  E+   +  +++ 
Sbjct: 205 ISSLRDLKFGGSESMRSTQQDLYSELEYEQDVGEDPEERQMVSLNRLFEKHRDVSLNRLL 264

Query: 201 ADDQGREIQE 230
              +  E+QE
Sbjct: 265 EKHRDEEMQE 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,212,648
Number of Sequences: 37544
Number of extensions: 231182
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)