Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2449
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.34 
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    30   1.0  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    30   1.0  
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   4.2  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   7.3  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    27   7.3  
Z74028-8|CAJ55251.1|  318|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 448 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 335
           RPS LT   YG+ GL+  +  K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   SSSALSWLRPSQXEQKENLKKHRADC 86
           S S ++W++P + E+ + +KK RA C
Sbjct: 136 SDSTVTWIKPDRTEEGDLMKKFRAPC 161


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   SSSALSWLRPSQXEQKENLKKHRADC 86
           S S ++W++P + E+ + +KK RA C
Sbjct: 136 SDSTVTWIKPDRTEEGDLMKKFRAPC 161


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   SSSALSWLRPSQXEQKENLKKHRADC 86
           S S ++W++P + E+ + +KK RA C
Sbjct: 136 SDSTVTWIKPDRTEEGDLMKKFRAPC 161


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 124 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 288
           +L   +++    PL+   +C+ I   + TKD K K    L+K+ N   +DK+ V +L   
Sbjct: 61  RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119

Query: 289 -IDACLANK 312
            I+A L NK
Sbjct: 120 EIEARLENK 128


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 145 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 285
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 145 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 285
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 297 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 419
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 297 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 419
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 297 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 419
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 229 KDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 339
           +DVA+A +   +      + ID C+A K N  + T W
Sbjct: 135 EDVAVAYIGKLDASQTRPEYIDVCVATKANIENCTVW 171


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 251 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 111
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 251 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 111
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


>Z74028-8|CAJ55251.1|  318|Caenorhabditis elegans Hypothetical
           protein C14C10.2b protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 49  SRRRT*RNTEPTVSPXTKADEQLVNKLKTGDFKTE-NEPLKKYALC 183
           S RR  RN + +      A ++++NK KTG+   +  E LKKY  C
Sbjct: 85  SARRQARNVDVSDDQICAAIQRVLNKDKTGNSAFQFFEFLKKYKFC 130


>Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical
           protein C14C10.2a protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 49  SRRRT*RNTEPTVSPXTKADEQLVNKLKTGDFKTE-NEPLKKYALC 183
           S RR  RN + +      A ++++NK KTG+   +  E LKKY  C
Sbjct: 85  SARRQARNVDVSDDQICAAIQRVLNKDKTGNSAFQFFEFLKKYKFC 130


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 319 CCLCWPGKRQSASLLSICLQ 260
           CC CW  +++ ++   +C+Q
Sbjct: 51  CCACWMRRKKESTTTKVCVQ 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,634,328
Number of Sequences: 27780
Number of extensions: 208944
Number of successful extensions: 652
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)