Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2448
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903...    30   2.3  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    29   3.9  

>07_01_1180 -
           11188789-11188797,11189032-11189068,11190328-11190392,
           11190464-11190562,11190707-11190878,11190973-11191325,
           11191451-11191561,11191637-11191708,11192203-11192420,
           11192546-11192594,11192697-11192750,11192876-11192958,
           11193088-11193304,11193387-11193510,11194042-11194105,
           11194413-11194500,11194623-11194724,11194842-11194937
          Length = 670

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 600 NSVTNTTFFYLYRLSFISESSEHHFYLS 683
           N VT+  + Y++RLS  S+S +H+F+ S
Sbjct: 572 NFVTSVFYRYMFRLSHPSKSKKHYFFSS 599


>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
            32412430-32413478,32414690-32416371,32416477-32416586,
            32417634-32418430,32418839-32418951,32419147-32419194,
            32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 293  ISHVQSIPKYYTSQSTKFSIYQSISTVLVNRDVDYLFFKLNKVRLPKF 150
            ++H   +P  Y  Q  + S +QS+ T ++   +D  F+ L K  L  F
Sbjct: 1422 VAHSGQLPDLYVLQGRQISEWQSVLTTVLELPLDLAFYGLAKKFLVVF 1469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,965
Number of Sequences: 37544
Number of extensions: 249119
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)